View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2639_high_12 (Length: 440)

Name: NF2639_high_12
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2639_high_12
NF2639_high_12
[»] chr6 (55 HSPs)
chr6 (31-440)||(29826014-29826423)
chr6 (31-262)||(26937081-26937312)
chr6 (31-266)||(28325468-28325703)
chr6 (32-266)||(28185354-28185588)
chr6 (32-303)||(28181102-28181373)
chr6 (31-303)||(28226937-28227209)
chr6 (31-266)||(28242791-28243026)
chr6 (31-246)||(28297698-28297913)
chr6 (31-246)||(28514160-28514375)
chr6 (31-266)||(28234551-28234785)
chr6 (31-262)||(27338034-27338265)
chr6 (31-262)||(27398774-27399005)
chr6 (31-246)||(27593005-27593220)
chr6 (31-262)||(27718348-27718579)
chr6 (198-306)||(28098294-28098402)
chr6 (31-162)||(25481729-25481860)
chr6 (31-262)||(25579706-25579937)
chr6 (31-262)||(27610971-27611202)
chr6 (31-262)||(27724814-27725045)
chr6 (44-262)||(27677583-27677801)
chr6 (41-234)||(28139538-28139731)
chr6 (343-440)||(29845089-29845182)
chr6 (31-162)||(26142852-26142983)
chr6 (31-246)||(27604690-27604905)
chr6 (31-162)||(27665186-27665317)
chr6 (41-258)||(26341904-26342124)
chr6 (44-261)||(26622976-26623193)
chr6 (44-261)||(26728954-26729171)
chr6 (44-245)||(27678946-27679147)
chr6 (31-147)||(27229219-27229335)
chr6 (318-365)||(26056209-26056256)
chr6 (318-365)||(26076179-26076226)
chr6 (31-258)||(26655976-26656203)
chr6 (31-258)||(26761947-26762174)
chr6 (31-246)||(26802429-26802644)
chr6 (191-246)||(28781286-28781341)
chr6 (191-246)||(31284435-31284490)
chr6 (188-262)||(26646623-26646697)
chr6 (188-262)||(26752591-26752665)
chr6 (188-262)||(26884309-26884383)
chr6 (188-266)||(27427571-27427649)
chr6 (41-162)||(28149935-28150055)
chr6 (210-262)||(25538706-25538758)
chr6 (210-262)||(26056092-26056144)
chr6 (210-262)||(26076062-26076114)
chr6 (317-381)||(26635972-26636036)
chr6 (317-381)||(26741938-26742002)
chr6 (317-369)||(26811791-26811843)
chr6 (201-241)||(26893461-26893501)
chr6 (31-139)||(26893563-26893671)
chr6 (317-381)||(26949943-26950007)
chr6 (317-381)||(26959448-26959512)
chr6 (317-381)||(26975334-26975398)
chr6 (317-365)||(27214702-27214750)
chr6 (317-365)||(27234478-27234526)
[»] chr4 (5 HSPs)
chr4 (31-262)||(5090923-5091154)
chr4 (188-262)||(18655433-18655507)
chr4 (191-262)||(18699356-18699427)
chr4 (47-262)||(18731460-18731675)
chr4 (188-266)||(18073906-18073984)
[»] scaffold0038 (4 HSPs)
scaffold0038 (31-266)||(116783-117018)
scaffold0038 (31-266)||(34712-34947)
scaffold0038 (31-303)||(27435-27707)
scaffold0038 (31-266)||(42953-43188)
[»] chr2 (1 HSPs)
chr2 (201-266)||(3279848-3279913)
[»] scaffold0019 (1 HSPs)
scaffold0019 (32-266)||(58247-58481)
[»] chr1 (2 HSPs)
chr1 (60-262)||(28127635-28127837)
chr1 (188-266)||(28164315-28164392)
[»] chr5 (2 HSPs)
chr5 (191-262)||(16689158-16689229)
chr5 (317-369)||(16689305-16689357)
[»] scaffold0237 (1 HSPs)
scaffold0237 (343-440)||(1293-1386)
[»] scaffold0349 (1 HSPs)
scaffold0349 (31-262)||(14325-14555)
[»] chr8 (2 HSPs)
chr8 (39-162)||(31903846-31903969)
chr8 (188-262)||(29273739-29273813)
[»] scaffold0419 (1 HSPs)
scaffold0419 (191-246)||(7672-7727)
[»] scaffold0277 (1 HSPs)
scaffold0277 (191-246)||(13617-13672)
[»] scaffold0003 (1 HSPs)
scaffold0003 (188-266)||(59714-59792)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 31 - 440
Target Start/End: Original strand, 29826014 - 29826423
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29826014 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcaattcaagaatctaggatagccattcctattttctctaccaattat 29826113  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826114 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 29826213  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatctcgaagagaggttcaaaaataacaaagagaagctccaaaaatggaagatggc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826214 ctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatcttgaagagaggttcaaaaataacaaagagaagctccaaaaatggaagatggc 29826313  T
Q  331 tcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtacccactcttgattctactcttgttttttcttatcatattttaaactgttgaa 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29826314 tcttaatcaagttgctaacttggctggatatcatttcaaacttgggtacccactcttgattctactcttgttttttcttatcatattttaaactgttgca 29826413  T
Q  431 gatgctacga 440  Q
    | ||||||||    
T  29826414 gctgctacga 29826423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 26937081 - 26937312
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| ||||| ||  |||| || ||||||||||| |||||||| ||||| ||| |||| ||  |||| ||||| ||| | ||||||| ||| |||    
T  26937081 tgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccatacctgtattctctatcaactat 26937180  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||  ||||||| ||||| || || |||||||| || || ||||| ||  ||||||  || |||| |||  ||||||||||||||||||| ||||||||||    
T  26937181 gccacttcttcattttgtttggacgaacttgtccacatcgttgactgcttcaagacaaaaggtcatctaattttgcctattttctatgaagtggatcctt 26937280  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    |||| || ||||| || |||||||||||||||    
T  26937281 ctcacgttcgacaccaaactgggagttatggt 26937312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 28325468 - 28325703
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||||||| |||||| |||| |||||||| ||||| |||||| | ||||| ||| |||| ||||||||   |||||||||||| |||| |||||||    
T  28325468 tgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattat 28325567  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| ||||||||||| || ||  || | ||  ||||    || || || || |||| |||  ||||||| |||||||| ||||    
T  28325568 gcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacgatgtggaacctt 28325667  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||| ||||||||||| |  || |||||||||||||    
T  28325668 ctcacgtgcgacatcacaagggcagttatggtaaag 28325703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 28185354 - 28185588
Alignment:
Q  32 gatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatg 131  Q
    ||||||| |||||||||| |||| || ||||| ||| | |||||| | ||||| ||| |||| ||||||||   ||||||  | || |||| ||||||||    
T  28185354 gatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatg 28185453  T
Q  132 cttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaag-ggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    |||||||||| |||||||| || |||||||| || ||  || | ||  ||||| | ||| || ||||| |||||||| ||||||||||||||||| ||||    
T  28185454 cttcttcttcattttgcttggacgaacttgtccacatcattaactgcttcaag-gaaagcgggcgtctagttttgccaattttctatgatgtggaacctt 28185552  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||| ||||||||||| || || |||||||||||||    
T  28185553 ctcacgtgcgacatcacacgggcagttatggtaaag 28185588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 303
Target Start/End: Original strand, 28181102 - 28181373
Alignment:
Q  32 gatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatg 131  Q
    ||||||| |||||||||| |||| || ||||| ||| | |||||| | ||||| ||| |||| ||||||||   ||||||  | || |||| ||||||||    
T  28181102 gatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatg 28181201  T
Q  132 cttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaag-ggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    |||||||||| |||||||| || |||||||| || ||  || | ||  ||||| | ||| || ||||| |||||||| ||||||||||||||||| ||||    
T  28181202 cttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag-gaaagcgggcgtctagttttgccaattttctatgatgtggaacctt 28181300  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatctcgaagagaggttcaaaaataacaa 303  Q
    |||| ||||||||||| |  || ||||||||||||| | ||  |||||    |||||||||| ||||||||||    
T  28181301 ctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatatagagaggttccaaaataacaa 28181373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 303
Target Start/End: Original strand, 28226937 - 28227209
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| | |||||||||| |||| || ||||| ||| | |||||| | ||||  ||| |||||||||||||   ||||||| | || |||| |||||||    
T  28226937 tgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattat 28227036  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  |||||   ||  | || || |||||||| ||||||||||||||||| ||||    
T  28227037 gcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaacctt 28227136  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatctcgaagagaggttcaaaaataacaa 303  Q
    |||||||||||||||| |  || ||||||||||||| | ||  |||||    |||||||||| ||||||||||    
T  28227137 ctcatgtgcgacatcacaagggcagttatggtaaagcactggatgatcatatagagaggttccaaaataacaa 28227209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 28242791 - 28243026
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||| ||| |||| | |||| ||| |||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||| | || |||| |||||||    
T  28242791 tgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattat 28242890  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||   |||||  || || || || |||||||| ||||||||||||||||| ||||    
T  28242891 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaacctt 28242990  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    || | ||| ||||||||| ||| |||||||||||||    
T  28242991 ctaacgtgagacatcagattggcagttatggtaaag 28243026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 28297913 - 28297698
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||| ||||||| || |||| |||||||| ||||| |||||| | |||   ||| ||||  |||||||   ||||||| | || ||||||||||||    
T  28297913 tgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattat 28297814  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaag-ggtcgtctcgttttgcctattttctatgatgtggatcct 229  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  ||||| | |||  | ||||| |||||||| ||||| ||||||||||| |||    
T  28297813 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag-gaaagtagccgtctagttttgccgattttttatgatgtggaacct 28297715  T
Q  230 tctcatgtgcgacatca 246  Q
    |||||||||||||||||    
T  28297714 tctcatgtgcgacatca 28297698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 28514160 - 28514375
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||| ||||||| || |||| |||||||| ||||| |||||| | |||   ||| ||||  |||||||   ||||||| | || ||||||||||||    
T  28514160 tgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattat 28514259  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaag-ggtcgtctcgttttgcctattttctatgatgtggatcct 229  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  ||||| | |||  | ||||| |||||||| ||||| ||||||||||| |||    
T  28514260 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag-gaaagtagccgtctagttttgccgattttttatgatgtggaacct 28514358  T
Q  230 tctcatgtgcgacatca 246  Q
    |||||||||||||||||    
T  28514359 tctcatgtgcgacatca 28514375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 28234551 - 28234785
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||  ||||||||| |||| || ||||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||| | || |||| |||||||    
T  28234551 tgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattat 28234650  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  || ||   ||  | || || |||||||| ||||||||||||||||| ||||    
T  28234651 gcttcttcttcattttgcttggacgaacttgtccacatcattta-tgcttcgaggaaaatagacgcctagttttgccaattttctatgatgtggaacctt 28234749  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||| ||||||||||| |  || |||||||||||||    
T  28234750 ctcacgtgcgacatcacaagggcagttatggtaaag 28234785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 27338265 - 27338034
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||| ||||||| || |||| |||||| |||||||| ||||| ||| |||| ||||||||    ||||| || || ||| | || |||    
T  27338265 tgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactat 27338166  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| |||||||| || |||||||| || ||  || | ||   |||||  | |||| ||   ||||||||| ||||||||| || |||||||     
T  27338165 gcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatccta 27338066  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    |||| || ||||||||||||||||||||||||    
T  27338065 ctcacgtacgacatcagactgggagttatggt 27338034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 27399005 - 27398774
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||| ||||||| || |||| |||||| |||||||| ||||| ||| |||| ||||||||    ||||| || || ||| | || |||    
T  27399005 tgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactat 27398906  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| |||||||| || |||||||| || ||  || | ||   |||||  | |||| ||   ||||||||| ||||||||| || |||||||     
T  27398905 gcatcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatccta 27398806  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    |||| || ||||||||||||||||||||||||    
T  27398805 ctcacgtacgacatcagactgggagttatggt 27398774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 27593220 - 27593005
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| |  |||||||||||  | ||||||||||| |||||| | ||||| ||| |||| ||||||||    |||||| | || |||| ||| |||    
T  27593220 tgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactat 27593121  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||||||||| || || |||||||  || ||  || | ||   |||||  |||||||| |  ||||||||| |||||| || |||||||||||    
T  27593120 gcctcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttctttggtgtggatcctt 27593021  T
Q  231 ctcatgtgcgacatca 246  Q
    ||||||||||||||||    
T  27593020 ctcatgtgcgacatca 27593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 27718579 - 27718348
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||||||||| || ||||||||||| |||||  | ||||| ||| | |||||||||||    |||||| | || |||| ||| |||    
T  27718579 tgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactat 27718480  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| |||     
T  27718479 gcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaaccta 27718380  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    || | |||||||||||||  || |||||||||    
T  27718379 ctaacgtgcgacatcagaaaggtagttatggt 27718348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 28098402 - 28098294
Alignment:
Q  198 tcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatctcgaagagaggttcaaaaa 297  Q
    ||||||| |||||||| | ||| ||||| |||||||| |||||||||||||| |||||||||||| ||| | |  || | |  |||||||||||| ||||    
T  28098402 tcgtttttcctattttttgtgacgtggaaccttctcacgtgcgacatcagacggggagttatggtgaagcattagctaagcatgaagagaggttccaaaa 28098303  T
Q  298 taacaaaga 306  Q
    |||||||||    
T  28098302 taacaaaga 28098294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 25481729 - 25481860
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| || || ||||||||||| || ||||||||||| |||||||| ||||| ||| |||||||||||||    ||||| || || ||| |||| |||    
T  25481729 tgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaactat 25481828  T
Q  131 gcttcttcttcgttttgcttagatgaacttgt 162  Q
    || |||||||| ||||| || || ||||||||    
T  25481829 gcatcttcttcattttgtttggacgaacttgt 25481860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 262
Target Start/End: Original strand, 25579706 - 25579937
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| || || ||||||||||| || ||||||||||| |||||||| ||||| ||| |||||||||||||    ||||| || || ||| |||| |||    
T  25579706 tgatgataatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactat 25579805  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| ||||| || || |||||||| || ||  || | ||   |||||  ||| || |  | || |||||  |||||||||||||||| |||     
T  25579806 gcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttgcttagtattgcccgttttctatgatgtggaaccta 25579905  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||  | |||||||||| |||||||||||||    
T  25579906 ctcacatacgacatcagagtgggagttatggt 25579937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 27611202 - 27610971
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || |||| |||||| || ||||||||||| |||||  | ||||| ||| | |||||||||||    |||||| | || |||| ||| |||    
T  27611202 tgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactat 27611103  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| |||     
T  27611102 gcctcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaaccta 27611003  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    || | |||||||||||||  || |||||||||    
T  27611002 ctaaagtgcgacatcagaaaggtagttatggt 27610971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 27725045 - 27724814
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||||||||| || ||||||||||| |||||  | ||||| ||| | |||||||||||    |||||| | || |||| ||| |||    
T  27725045 tgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactat 27724946  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || | |||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| |||     
T  27724945 gcctattcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaaccta 27724846  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    || | |||||||||||||  || |||||||||    
T  27724845 ctaacgtgcgacatcagaaaggtagttatggt 27724814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 262
Target Start/End: Complemental strand, 27677801 - 27677583
Alignment:
Q  44 cttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgt 143  Q
    |||||||||||||| ||||||||||| |||||| | ||||| ||| |||| ||||||||    ||| || | || |||| ||| ||||| |||||||| |    
T  27677801 cttcaaagaggggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcat 27677702  T
Q  144 tttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgaca 243  Q
    |||| || || |||||||| || ||  || | ||   |||||  |||||||| |||||| ||||| |||||| || |||||| ||| ||  |||||||||    
T  27677701 tttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttgctgtggaacctactattgtgcgaca 27677602  T
Q  244 tcagactgggagttatggt 262  Q
    |||||  || |||||||||    
T  27677601 tcagaaaggtagttatggt 27677583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 234
Target Start/End: Original strand, 28139538 - 28139731
Alignment:
Q  41 gagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttctt 140  Q
    ||||||||| |||| ||||||||  |||| ||||| || || || ||| |||||||||||||   ||| ||| | || || | ||| ||||| |||||||    
T  28139538 gagcttcaaggaggtgacgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttctt 28139637  T
Q  141 cgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctca 234  Q
    |||||||||| || |||||||| || ||  |||| ||  |||| |  |||||  || | ||||||||| ||||||||| |||||||||||||||    
T  28139638 cgttttgcttggacgaacttgtccacatcattgactgcttcaacacaaagggatgtttggttttgcctgttttctatggtgtggatccttctca 28139731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 29845182 - 29845089
Alignment:
Q  343 tgctaacttgtctggatatcatttcaaacttgggtacccactcttgattctactcttgttttttcttatcatattttaaactgttgaagatgctacga 440  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    | ||| | || ||| |||||||||| ||||||| ||||| || ||||||||    
T  29845182 tgctaacttgtttggctatcatttcaaacttgggtacccactc----tactattgttttttcttcttatcatgttttaaattgttgcagctgctacga 29845089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 26142852 - 26142983
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| || || ||| ||||||| || ||||||||||| |||||||| ||||| ||| |||||||||||||    ||||| || || ||| |||| |||    
T  26142852 tgatgataatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactat 26142951  T
Q  131 gcttcttcttcgttttgcttagatgaacttgt 162  Q
    || |||||||| ||||| || || ||||||||    
T  26142952 gcatcttcttcattttgtttggacgaacttgt 26142983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 27604905 - 27604690
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| || || |||| |||||| || |||||||||||  ||||| | ||||| ||| | ||||| |||||    |||||| | || |||| ||| |||    
T  27604905 tgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttttattcctgtgttttctatcaaatat 27604806  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| ||||| || ||||||||||| || ||  || | ||   || ||  ||||||||  ||||||||||| |||||| || |||||| ||||    
T  27604805 gcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggtcgcgtcgttttgcctgttttctttggtgtggaacctt 27604706  T
Q  231 ctcatgtgcgacatca 246  Q
    ||||||||||||||||    
T  27604705 ctcatgtgcgacatca 27604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 162
Target Start/End: Complemental strand, 27665317 - 27665186
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| ||||||| ||  || |||||||||||||| |||||   ||||   ||| ||||||| ||||| ||||||  ||| |||||||  || |||    
T  27665317 tgatgacaaggagcttccaactggtgacgaaatcacaccttcactccggaagagcattgaagaatcgaggattgccattattatattctctaagaactat 27665218  T
Q  131 gcttcttcttcgttttgcttagatgaacttgt 162  Q
    ||| ||||||| ||||| ||||||||||||||    
T  27665217 gctacttcttcattttgtttagatgaacttgt 27665186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 26342124 - 26341904
Alignment:
Q  41 gagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttctt 140  Q
    ||||||||  |||| ||| |||||||||  |||||||| || || ||| |||| || |||||   |||||| |||||||| | ||| |||||||||||||    
T  26342124 gagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcattccaattttctcaatcaactatgcttcttctt 26342025  T
Q  141 cgttttgcttagatgaacttgtgcatatagttgagtgtgtcaag---aggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgt 237  Q
    ||||||| || || |||||||| || ||  || | ||  |||||   | |||||||||     |||||||| ||||||||||  |||| |||||||||||    
T  26342024 cgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaagaagggtcgcaaaattttgcctgttttctatgacatggaaccttctcatgt 26341925  T
Q  238 gcgacatcagactgggagtta 258  Q
     |||| ||||| |||||||||    
T  26341924 acgacgtcagattgggagtta 26341904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 26622976 - 26623193
Alignment:
Q  44 cttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgt 143  Q
    |||||||||||||||||||||| ||| |||||||  || || ||  |||| ||||||||    |||||| | || ||| |||| ||||| | |||||| |    
T  26622976 cttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcat 26623075  T
Q  144 tttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgaca 243  Q
    |||| || ||||||||||| || ||  || | ||   ||| |  ||||||||||||||||||||  | |||||||  ||||||||| ||||  | || ||    
T  26623076 tttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggca 26623175  T
Q  244 tcagactgggagttatgg 261  Q
    ||| ||||||||||||||    
T  26623176 tcaaactgggagttatgg 26623193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 26728954 - 26729171
Alignment:
Q  44 cttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgt 143  Q
    |||||||||||||||||||||| ||| |||||||  || || ||  |||| ||||||||    |||||| | || ||| |||| ||||| | |||||| |    
T  26728954 cttcaaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcat 26729053  T
Q  144 tttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgaca 243  Q
    |||| || ||||||||||| || ||  || | ||   ||| |  ||||||||||||||||||||  | |||||||  ||||||||| ||||  | || ||    
T  26729054 tttgtttggatgaacttgtccacatcattcactgctacaaaacaaagggtcgtctcgttttgcccgtcttctatggcgtggatcctactcacatacggca 26729153  T
Q  244 tcagactgggagttatgg 261  Q
    ||| ||||||||||||||    
T  26729154 tcaaactgggagttatgg 26729171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 27678946 - 27679147
Alignment:
Q  44 cttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgt 143  Q
    ||||||||||| || ||||||||||| |||||| | ||||| ||| |||| ||||||||    |||||| | || |||| ||| ||||| |||||||| |    
T  27678946 cttcaaagaggagatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcat 27679045  T
Q  144 tttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgaca 243  Q
    |||| || || |||||||| || ||  || | ||   |||||  |||||||| |||||| ||||| |||||| || |||||| ||| ||  |||||||||    
T  27679046 tttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgaca 27679145  T
Q  244 tc 245  Q
    ||    
T  27679146 tc 27679147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 27229219 - 27229335
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||||||||| |||||||||||||| ||||| || ||||| ||| | |||||| ||||    ||||| || || ||| |||| |||    
T  27229219 tgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttttattcccatattttctgccaactat 27229318  T
Q  131 gcttcttcttcgttttg 147  Q
    || |||||||| |||||    
T  27229319 gcatcttcttcattttg 27229335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 26056209 - 26056256
Alignment:
Q  318 aatggaagatggctcttaatcaagttgctaacttgtctggatatcatt 365  Q
    |||||||||||||||||| ||||| |||||||||||| || |||||||    
T  26056209 aatggaagatggctcttactcaagctgctaacttgtccggctatcatt 26056256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 26076179 - 26076226
Alignment:
Q  318 aatggaagatggctcttaatcaagttgctaacttgtctggatatcatt 365  Q
    |||||||||||||||||| ||||| |||||||||||| || |||||||    
T  26076179 aatggaagatggctcttactcaagctgctaacttgtccggctatcatt 26076226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 26655976 - 26656203
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||  ||||| || ||||||||||| ||||| || ||||| ||| ||||||| |||||    ||||| || || ||| |||| |||    
T  26655976 tgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactat 26656075  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| ||||| || || |||||||| || ||  || | ||    ||||  |||||| ||   ||||||||| ||||||||| ||||||||||     
T  26656076 gcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatccta 26656175  T
Q  231 ctcatgtgcgacatcagactgggagtta 258  Q
    ||||  | |||||||||||||| |||||    
T  26656176 ctcacatacgacatcagactggaagtta 26656203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 26761947 - 26762174
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||  ||||| || ||||||||||| ||||| || ||||| ||| ||||||| |||||    ||||| || || ||| |||| |||    
T  26761947 tgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactat 26762046  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||||| ||||| || || |||||||| || ||  || | ||    ||||  |||||| ||   ||||||||| ||||||||| ||||||||||     
T  26762047 gcatcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaagggttgttcggttttgcctgttttctatggtgtggatccta 26762146  T
Q  231 ctcatgtgcgacatcagactgggagtta 258  Q
    ||||  | |||||||||||||| |||||    
T  26762147 ctcacatacgacatcagactggaagtta 26762174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 26802429 - 26802644
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||||||||| || ||||||||||| |||||  | ||||| ||| |||||||||| ||    |||||| | || |||| ||| |||    
T  26802429 tgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgttttctatcaactat 26802528  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || |||||    |||||||| || |||||||| || ||  || | ||    ||||  |||||||| ||||| ||||||||||||| || ||||||||||     
T  26802529 gcctcttcaaaattttgcttggacgaacttgttcacattattcattgctataagacaaagggtcgcctcgtcttgcctattttctttggtgtggatccta 26802628  T
Q  231 ctcatgtgcgacatca 246  Q
    || ||||||| |||||    
T  26802629 ctaatgtgcgccatca 26802644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 28781286 - 28781341
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 246  Q
    ||||| |||||||||||| |||||| || |||||||||| || |||||||||||||    
T  28781286 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatca 28781341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 31284435 - 31284490
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 246  Q
    ||||| |||||||||||  |||||| ||  ||||||||||||||||||||||||||    
T  31284435 ggtcgcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatca 31284490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 26646623 - 26646697
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||||||||||||||||||  |||||||||  ||||||||| ||||  | || ||||| | |||||||||||||    
T  26646623 aagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggt 26646697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 26752591 - 26752665
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||||||||||||||||||  |||||||||  ||||||||| ||||  | || ||||| | |||||||||||||    
T  26752591 aagggtcgtctcgttttgcccgttttctatggcgtggatcctactcagatacggcatcaaagtgggagttatggt 26752665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 26884309 - 26884383
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||| |||||||||||| ||||   || |||||||||| || ||||||||||||| || || |||||||||    
T  26884309 aagggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggt 26884383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 27427649 - 27427571
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||| || || || ||||||||||    
T  27427649 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaag 27427571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 28149935 - 28150055
Alignment:
Q  41 gagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttctt 140  Q
    |||||| || ||||||||||||||||||| |||| | | ||||| ||| |||| || |||||   |||||| || ||||||| ||| ||| |||||||||    
T  28149935 gagctttaacgaggggacgaaatcacaccatcac-tctcaaggccattgaagagtccaggattttcattccaatcttctctatcaactatacttcttctt 28150033  T
Q  141 cgttttgcttagatgaacttgt 162  Q
    | ||||| || || ||||||||    
T  28150034 cattttgtttggacgaacttgt 28150055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 25538706 - 25538758
Alignment:
Q  210 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  25538706 ttttctatgatgtggaacctactcagttacgacatcagagtgggagttatggt 25538758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 26056092 - 26056144
Alignment:
Q  210 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  26056092 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 26056144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 26076062 - 26076114
Alignment:
Q  210 ttttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||||||||||| ||| ||||  | |||||||||| |||||||||||||    
T  26076062 ttttctatgatgtggaacctactcacatacgacatcagagtgggagttatggt 26076114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 26635972 - 26636036
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtaccc 381  Q
    ||||||||||  |||||||| |||| ||||||||| |||||  | |||||||| |||||||||||    
T  26635972 aaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccc 26636036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 26741938 - 26742002
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtaccc 381  Q
    ||||||||||  |||||||| |||| ||||||||| |||||  | |||||||| |||||||||||    
T  26741938 aaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccc 26742002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 26811791 - 26811843
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaa 369  Q
    ||||||||||| |||||||| ||||||| |||||| ||||| | |||||||||    
T  26811791 aaatggaagatagctcttaaccaagttggtaacttatctggctttcatttcaa 26811843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 26893501 - 26893461
Alignment:
Q  201 ttttgcctattttctatgatgtggatccttctcatgtgcga 241  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  26893501 ttttgcctgttttctatgatgtgcatccttctcaagtgcga 26893461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 26893671 - 26893563
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| | ||||||||| ||||| ||||||||| |||| |||||| | ||||| ||| |||| |||| ||||  ||||||  |  |||||| ||| |||    
T  26893671 tgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtctatgatatacattccagtcctctctatcaactat 26893572  T
Q  131 gcttcttct 139  Q
    |||||||||    
T  26893571 gcttcttct 26893563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 26949943 - 26950007
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtaccc 381  Q
    ||||||||||| ||||| ||  |||||||| |||| ||||| || |||||||| |||||||||||    
T  26949943 aaatggaagatagctctgaacaaagttgctgacttatctggctaccatttcaatcttgggtaccc 26950007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 26959448 - 26959512
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtaccc 381  Q
    ||||||||||  |||||||| |||| ||||||||| |||||  | |||||||| |||||||||||    
T  26959448 aaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccc 26959512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 26975334 - 26975398
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaaacttgggtaccc 381  Q
    ||||||||||  |||||||| |||| ||||||||| |||||  | |||||||| |||||||||||    
T  26975334 aaatggaagaaagctcttaaccaagctgctaacttatctggccaccatttcaatcttgggtaccc 26975398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 27214702 - 27214750
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatt 365  Q
    ||||||||||| |||||||| |||| ||||||||| ||||| |||||||    
T  27214702 aaatggaagatagctcttaaccaagctgctaacttatctggctatcatt 27214750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 27234526 - 27234478
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatt 365  Q
    ||||||||||| |||||||| |||| ||||||||| ||||| |||||||    
T  27234526 aaatggaagatagctcttaaccaagctgctaacttatctggctatcatt 27234478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 5091154 - 5090923
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||| |||||||||  |||| ||| |||| ||||| |||||| | ||||| ||||||||||||| ||| | ||||    ||||||||| | | |||    
T  5091154 tgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaagattgtcattatcgttttctctaaccactat 5091055  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||||||||| |||||||||||||| |||||  || | ||   ||||   || ||| | || ||||||||||||||||||| |||||| ||||    
T  5091054 gcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctatggtgtggaacctt 5090955  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||||||||| |||||||||| |||||||||    
T  5090954 ctcatgtgcgatatcagactggaagttatggt 5090923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 18655507 - 18655433
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||||||||||||||| ||| |||||||||  ||||||||| ||||  | |||||||| ||||| |||||||||    
T  18655507 aagggtcgtctcgtttttcctgttttctatggcgtggatcctactcacatacgacatcaaactggaagttatggt 18655433  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 18699427 - 18699356
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||||||||||||| |||||||||  || |||||| ||||  | |||||||| | |||||||||||||    
T  18699427 ggtcgtctcgttttgcctgttttctatggcgtagatcctactcacatacgacatcaaagtgggagttatggt 18699356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 18731675 - 18731460
Alignment:
Q  47 caaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgtttt 146  Q
    ||||||||||| ||||||| ||| ||||| |  || || ||| |||| ||||||||   ||||||| | || |||| ||| ||||| |||||||| ||||    
T  18731675 caaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcatttt 18731576  T
Q  147 gcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 246  Q
    | || || |||||||| || ||  |  | ||   |||||  ||||||||||| ||||||||| |||||||||  |||||||||  |||  | ||||||||    
T  18731575 gtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtcacatacgacatca 18731476  T
Q  247 gactgggagttatggt 262  Q
     | |||||||||||||    
T  18731475 aagtgggagttatggt 18731460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 18073906 - 18073984
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||| || || || ||||||||||    
T  18073906 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaag 18073984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 116783 - 117018
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||||||| |||||| |||| |||||||| ||||| |||||| | ||||| ||| |||| ||||||||   |||||||||||| |||| |||||||    
T  116783 tgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcattcctattttgtctatcaattat 116882  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| ||||||||||| || ||  || | ||  ||||    || || || || |||| |||  ||||||| |||||||| ||||    
T  116883 gcttcttcttccttttgcttggatgaacttgtccacattattcactgcttcaaagaaaatgggcgcctagtttagccagttttctacgatgtggaacctt 116982  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||| ||||||||||| |  || |||||||||||||    
T  116983 ctcacgtgcgacatcacaagggcagttatggtaaag 117018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 34712 - 34947
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||  ||||||||| |||| || ||||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||| | || |||| |||||||    
T  34712 tgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattat 34811  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaag-ggtcgtctcgttttgcctattttctatgatgtggatcct 229  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  ||||| | ||| || ||||| |||||||| ||||||||||||||||| |||    
T  34812 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag-gaaagcgggcgtctagttttgccaattttctatgatgtggaacct 34910  T
Q  230 tctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    ||||| ||||||||||| |  || |||||||||||||    
T  34911 tctcacgtgcgacatcacaagggcagttatggtaaag 34947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 303
Target Start/End: Original strand, 27435 - 27707
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||| | |||||||||| |||| || ||||| ||| | |||||| | ||||  ||| |||||||||||||   ||||||| | || |||| |||||||    
T  27435 tgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattat 27534  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||  |||||   ||  | || || |||||||| ||||||||||||||||| ||||    
T  27535 gcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaaggaaaatcggcgccttgttttgccaattttctatgatgtggaacctt 27634  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaaggaatgactgatctcgaagagaggttcaaaaataacaa 303  Q
    |||||||||||||||| |  || ||||||||||||| | ||  |||||    |||||||||| ||||||||||    
T  27635 ctcatgtgcgacatcacaagggcagttatggtaaagcactggatgatcatatagagaggttccaaaataacaa 27707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 266
Target Start/End: Original strand, 42953 - 43188
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    |||||||| ||| |||| | |||| ||| |||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||| | || |||| |||||||    
T  42953 tgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattat 43052  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    ||||||||||| |||||||| || |||||||| || ||  || | ||   |||||  || || || || |||||||| ||||||||||||||||| ||||    
T  43053 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttctatgatgtggaacctt 43152  T
Q  231 ctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    || | ||| ||||||||| ||| |||||||||||||    
T  43153 ctaacgtgagacatcagattggcagttatggtaaag 43188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 3279848 - 3279913
Alignment:
Q  201 ttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||    
T  3279848 ttttacctattttctatgatgtggaaccttcccacgtgcgacatcagactgggagttatggcaaag 3279913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 266
Target Start/End: Complemental strand, 58481 - 58247
Alignment:
Q  32 gatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatg 131  Q
    ||||||| |||||||||| |||| |||||||| ||||| |||||| | ||||| ||| |||| ||||||||   ||||||  | || |||| ||| ||||    
T  58481 gatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtcttgtctatcaactatg 58382  T
Q  132 cttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttc 231  Q
    |||||||||| ||||||||  | |||||||| || ||  || | ||  || ||    | || || || |||||||| ||||||||||| ||||| |||||    
T  58381 cttcttcttcattttgcttgaacgaacttgtccacatcattcactgcttcgaggaatatgggcgcctagttttgccaattttctatgacgtggaaccttc 58282  T
Q  232 tcatgtgcgacatcagactgggagttatggtaaag 266  Q
    ||| |||||||||||   ||| |||||||||||||    
T  58281 tcacgtgcgacatcaagatggaagttatggtaaag 58247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 262
Target Start/End: Complemental strand, 28127837 - 28127635
Alignment:
Q  60 aaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttcgttttgcttagatgaact 159  Q
    |||||||||| |||||| | ||||| ||| |||||||||| ||    |||||| | || |||||||| ||||| |||||||| ||||| || || |||||    
T  28127837 aaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaact 28127738  T
Q  160 tgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttat 259  Q
    |||||| ||  || | ||   |||||  |||||||| || ||||||||| |||||| ||  ||||||||| || |||||||| |||| || |||||||||    
T  28127737 tgtgcacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagttat 28127638  T
Q  260 ggt 262  Q
    |||    
T  28127637 ggt 28127635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 28164392 - 28164315
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||||||| || ||||||||| |||||| ||  ||||||||| || ||||||||||||| || ||||||||||| ||||    
T  28164392 aagggtcgcctagttttgcctgttttct-tggcgtggatcctactgatgtgcgacatcatacagggagttatggcaaag 28164315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 16689158 - 16689229
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    ||||| || ||||||||| |||||||||| ||||||||||| |||||| ||||||||| ||| |||||||||    
T  16689158 ggtcggctagttttgcctgttttctatgacgtggatccttcgcatgtgagacatcagattggaagttatggt 16689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 16689305 - 16689357
Alignment:
Q  317 aaatggaagatggctcttaatcaagttgctaacttgtctggatatcatttcaa 369  Q
    |||||||||| |||||||||||||| ||||||| | || || |||||||||||    
T  16689305 aaatggaagacggctcttaatcaagctgctaacctctccggttatcatttcaa 16689357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 440
Target Start/End: Complemental strand, 1386 - 1293
Alignment:
Q  343 tgctaacttgtctggatatcatttcaaacttgggtacccactcttgattctactcttgttttttcttatcatattttaaactgttgaagatgctacga 440  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    | ||| | || ||| |||||||||| ||||||| ||||| || ||||||||    
T  1386 tgctaacttgtttggctatcatttcaaacttgggtacccactc----tactattgttttttcttcttatcatgttttaaattgttgcagctgctacga 1293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 262
Target Start/End: Complemental strand, 14555 - 14325
Alignment:
Q  31 tgatgacaaagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattat 130  Q
    ||||||||| || ||||||||||| || ||||||||||| |||||  | ||||| ||| | |||||||||||    |||||| | || |||| ||| |||    
T  14555 tgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactat 14456  T
Q  131 gcttcttcttcgttttgcttagatgaacttgtgcatatagttgagtgtgtcaagaggaagggtcgtctcgttttgcctattttctatgatgtggatcctt 230  Q
    || | |||||||||||| || || |||||||| || ||| || | ||   |||||  |||||||| |||||||||||| ||||||  |  ||||| |||     
T  14455 gcct-ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttcttcggcgtggaaccta 14357  T
Q  231 ctcatgtgcgacatcagactgggagttatggt 262  Q
    || | |||||||||||||  || |||||||||    
T  14356 ctaacgtgcgacatcagaaaggtagttatggt 14325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 31903846 - 31903969
Alignment:
Q  39 aagagcttcaaagaggggacgaaatcacaccctcacttgtgaaggcgattcaagaatctaggatagccattcctattttctctaccaattatgcttcttc 138  Q
    |||| |||||||||||  | ||||||||||| |||||| |  |||| ||| |||| |||||||| ||||||  | |  ||||||  || |||||||||||    
T  31903846 aagaacttcaaagaggacatgaaatcacaccatcacttttagaggcaattgaagagtctaggattgccattattgtgctctctaaaaactatgcttcttc 31903945  T
Q  139 ttcgttttgcttagatgaacttgt 162  Q
    ||| ||||||||| ||||||||||    
T  31903946 ttcattttgcttacatgaacttgt 31903969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 29273813 - 29273739
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggt 262  Q
    |||||||||||| |||||||| | |||||||  ||||||||| ||||  | |||||||| | |||||||||||||    
T  29273813 aagggtcgtctcattttgcctgtcttctatggcgtggatcctactcacatacgacatcaaagtgggagttatggt 29273739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 7672 - 7727
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 246  Q
    ||||| |||||||||||| |||||| || |||||||||| || |||||||||||||    
T  7672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatca 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 13672 - 13617
Alignment:
Q  191 ggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 246  Q
    ||||| |||||||||||| |||||| || |||||||||| || |||||||||||||    
T  13672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatca 13617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 59714 - 59792
Alignment:
Q  188 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatcagactgggagttatggtaaag 266  Q
    |||||| | |||||||||||| |||||| || |||||| ||| || ||||||||||||| || || || ||||||||||    
T  59714 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaag 59792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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