View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_15 (Length: 401)
Name: NF2639_high_15
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 134 - 383
Target Start/End: Original strand, 52138001 - 52138250
Alignment:
| Q |
134 |
ccttaaacgtctgcaaataaatagatgaacgcgactggatacgcggcggcgccgatggttgaacatgacccatatgtcaaggctggtttaatgtacatca |
233 |
Q |
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| T |
52138001 |
ccttaaacgtctgcaaataaagagatgaacgcgactggatacgcggcggcgtcgatggttgaacatgacccatatgtcaaggctggtttaatgtacatca |
52138100 |
T |
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| Q |
234 |
ttaagtgtcatatccattttcatcatttaattttctggtaatttaaagtaacgttgaagcatacccatatgtttgttttcttcaaactcatacccatttg |
333 |
Q |
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| T |
52138101 |
ttaagtgtcatatccattttcatcatttaattttctgttaatttaaagtaatgttgaagcatacccatatgtttgttttcttcaaactcatacccatttg |
52138200 |
T |
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| Q |
334 |
gtttgttgtttgttggagtttttatggtaaagtagtaagaatgggaggtt |
383 |
Q |
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| T |
52138201 |
gtttgttgtttgttggagtttttatggtacagtagtaagaatgggaggtt |
52138250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 52137932 - 52137977
Alignment:
| Q |
78 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatga |
123 |
Q |
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| T |
52137932 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatga |
52137977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 78 - 383
Target Start/End: Original strand, 9854045 - 9854344
Alignment:
| Q |
78 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatgagnnnnnnnnnccttaaacgtctgcaaataaatagatgaacgcgactggatacgc |
177 |
Q |
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| T |
9854045 |
gcatgaaatgttgatgaagagagacagcgcccataaaacataatgaaaaaaaaaaaccttaaacgtctgcaaataaagagatgaatgtgactggatacgt |
9854144 |
T |
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| Q |
178 |
ggcggcgccgatggttgaacatgacccatatgtcaaggctggtttaatgtacatcattaagtgtcat-atccattttcatcatttaattttctggtaatt |
276 |
Q |
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| T |
9854145 |
ggcggcgccgatggtttaacatgacccatatgtcaaggctggtttaatgtacatcattaagtgtcatgatccattttcatcatttaattttctggtaatt |
9854244 |
T |
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| Q |
277 |
taaagtaacgttgaagcatacccatatgtttgttttcttcaaactcatacccatttggtttgttgtttgttggagtttttatggtaaagtagtaagaatg |
376 |
Q |
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| T |
9854245 |
taaagtaacgttgaagcatacccatatgtttgttttcttcaaactcagacccatttg-------gtttgttggagtttttatggtacaatagtaagaatg |
9854337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 18819645 - 18819575
Alignment:
| Q |
307 |
tgttttcttcaaactcatacccatttggtttgttgtttgttggagtttttatggtaaagtagtaagaatgg |
377 |
Q |
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| T |
18819645 |
tgttttcttcaaactcatatcccttttgtttgctgtttgttgggggttttatggtgcagtactaagaatgg |
18819575 |
T |
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