View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_17 (Length: 336)
Name: NF2639_high_17
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 17494345 - 17494663
Alignment:
| Q |
1 |
attaataatgcaacagaggttaatgccaagaaatttgaggtcccagtatttgacttttccaagagattatcatgcaagtggtctacaggagctggacctc |
100 |
Q |
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| T |
17494345 |
attaataatgcaacagaggttaatgccaagaaatttgaggtcccagtatttgacttttccaagagattatcatgcaagtggtctacaggagctggacctc |
17494444 |
T |
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| Q |
101 |
gtattgggtgtgtacgtgactatcctgaacaccttcaatcaagggcattggagcaagttagtttgtcacctagacctgcttctgcaagaccatatagcta |
200 |
Q |
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| T |
17494445 |
gtattgggtgtgtacgtgactatcctgaacaccttcaatcaagggcattggagcaagttagtttgtcacctagacctgcttctgcaagaccatatagcta |
17494544 |
T |
|
| Q |
201 |
tggcccaataccttctccaaggccaagcccaaaagttaggatttctcctaggcttgcatacatggggttacctagcccaagaaccccgattcctgtttga |
300 |
Q |
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| T |
17494545 |
tggcccaataccttctccaaggccaagcccaaaagttaggatttctcctaggcttgcatacatggggttacctagcccaagaaccccgattcctgtttga |
17494644 |
T |
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| Q |
301 |
ggcgagtatcgatggaact |
319 |
Q |
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| T |
17494645 |
ggcgagtatcgatggaact |
17494663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 283
Target Start/End: Complemental strand, 52367403 - 52367193
Alignment:
| Q |
73 |
tgcaagtggtctacaggagctggacctcgtattgggtgtgtacgtgactatcctgaacaccttcaatcaagggcattggagcaagttagtttgtcaccta |
172 |
Q |
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| T |
52367403 |
tgcaagtggtcaactggagctggtccacgtattggttgtgttcgtgactatcctgaacacttgcagtcaaaagcattggaacaagttagtctgtctccaa |
52367304 |
T |
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| Q |
173 |
gacctgcttctgcaagaccatatagctatggcccaataccttctccaaggccaagcccaaaagttaggatttctcctaggcttgcatacatggggttacc |
272 |
Q |
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| T |
52367303 |
ggccaagttcttcaagactcaacaaatttggcccaattccttctcctaggcctagtccaaaagttaggatgtcacctaggcttgtgtatatgggattacc |
52367204 |
T |
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| Q |
273 |
tagcccaagaa |
283 |
Q |
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||| ||||||| |
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| T |
52367203 |
tagtccaagaa |
52367193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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