View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_19 (Length: 320)
Name: NF2639_high_19
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 39083088 - 39082790
Alignment:
| Q |
1 |
gctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083088 |
gctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgcttcg |
39082989 |
T |
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| Q |
101 |
tgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattc |
200 |
Q |
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| T |
39082988 |
tgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattc |
39082889 |
T |
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| Q |
201 |
aatatttttcctctattacattttattttatgtatatcttacctctttgtggtcatcatcatctggagctagaaatctattgccttgactgaaaatagt |
299 |
Q |
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| T |
39082888 |
aatatttttcctccattacattttattttatgtatatcttacctctttgtggtcatcatcatctggagctagaaatctattgccttgactaaaaatagt |
39082790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31727919 - 31727773
Alignment:
| Q |
1 |
gctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccactcaccctttgatgagtaaaaatgcttcg |
100 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
31727919 |
gctccagacggtgtgaaataggcaccattcaatattagatctccttcagatctccagt-ccagttctcccactcaccttttgatgagtaaaaatgcttcg |
31727821 |
T |
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| Q |
101 |
tgatctgataaataacccaatggttcattccaaaaacacataaaatca |
148 |
Q |
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| T |
31727820 |
tgatctgataaataacccaatggttcattccaaaaacacaaaaaatca |
31727773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 31727752 - 31727663
Alignment:
| Q |
139 |
cataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattcaatatttttcctctattacattttatttt |
229 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |||| |
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| T |
31727752 |
cataaaaccaataagacatggtagactactagaatctaatagctttgcactaaactatatt-aatatttttccactattacattttttttt |
31727663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 31727490 - 31727413
Alignment:
| Q |
220 |
attttattttatgtatatcttacctctttgtggtcatcatcatctggagctagaaatctattgccttgactgaaaatagt |
299 |
Q |
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||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31727490 |
attttgttctatgtatctcttacctct--gtggtcatcatcatctggagctagaaatctattgccttgactaaaaatagt |
31727413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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