View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_24 (Length: 276)
Name: NF2639_high_24
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 7902452 - 7902717
Alignment:
| Q |
1 |
acatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgc |
100 |
Q |
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| T |
7902452 |
acatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgc |
7902551 |
T |
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| Q |
101 |
caatcaagttgctggtaggtactttgtggccaccaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaa |
200 |
Q |
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| T |
7902552 |
caatcaagttgctggtaggtactttgtggccaccaaggcttttatggatgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaa |
7902651 |
T |
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| Q |
201 |
gacatcccaaacactgtccaacccatccttccacagttgccagctagcaatgacacaggttctgct |
266 |
Q |
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| T |
7902652 |
gacatcccaaacactgtccaacccatccttccacagttgccagctagcaatgacacaggttttgct |
7902717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7892179 - 7892269
Alignment:
| Q |
1 |
acatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttct |
91 |
Q |
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||||||||||||| || |||||||| ||||| |||||||||||||| || || | || ||||||| |||||||||||||||||| ||||| |
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| T |
7892179 |
acatgacagtagttgaagttgatgcagtttacacaaaaccattcacaacacaatccattctaattggtcctggtcaaaccacaaatgttct |
7892269 |
T |
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