View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_27 (Length: 250)
Name: NF2639_high_27
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37975612 - 37975373
Alignment:
| Q |
1 |
cttaatcaagcaaatcagataattggaaattctcactctcttgtggtattgggatagtaatatgatagttaagtacatacatctcaactagggttcaccc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||| |
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| T |
37975612 |
cttaatcaagcaaatcggataattggaaattctcactctcttgtggtattgggatagtaatatgagagttt--tccatacatctcaactaaggttcaccc |
37975515 |
T |
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| Q |
101 |
caaattttatatttccacctgtaatgcatggagactatgtaaaaatatctagctttgaaaatatgtgcaaaaattatatcttggttggttaagagcctta |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
37975514 |
caaattttatatttccacctgtgatgcatggagactatgtaaaaatatctagctttgaaaatatgtgcaaaaatcatatcttggttggttaaaagcctta |
37975415 |
T |
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| Q |
201 |
gctgaagtcggttaagttttttcaattgtgactccctttgtt |
242 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
37975414 |
gctgaaatcggttaagttttttcaattgtgactctctttgtt |
37975373 |
T |
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