View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_3 (Length: 739)
Name: NF2639_high_3
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 310 - 715
Target Start/End: Original strand, 31791927 - 31792329
Alignment:
| Q |
310 |
actaaagaacactttggtcacacgtgtgagattgatgggggtgttgtgttgcagttgcagggtcataggctgtctctctctaaattgacaagaaagacaa |
409 |
Q |
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| T |
31791927 |
actaaagaacaccttggtcacacgtgtgagattgatgggggtgttgtgttgcagttgcagggtcataggctgtctctctctaaattgacaagaaagacaa |
31792026 |
T |
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| Q |
410 |
gtatgtgatgggtgcttacttcggcttgtacagagaaaagcaaggataggaagtaggaacatatatctttcttttcaaaatgctacaaaaacaaaacaag |
509 |
Q |
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| T |
31792027 |
gtatgtgatgggtgcttacttcggcttgtacagagaaaagcaaggataggaagtaggaacatatatctttcttttcaaaatgctacaaaaacaaaacaag |
31792126 |
T |
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| Q |
510 |
atttagaaaggagggtctttgctttgttattgttatgttttgttagtagtttgctacacaatggaacaagccttgtcattgttcataaacactcactaat |
609 |
Q |
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| T |
31792127 |
atttagaaaggagggtctttgctttgttattgttatgttttgttagtagtttgctacacaatggaacaagccttgtcattgttcataaacactcactaat |
31792226 |
T |
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| Q |
610 |
aagtgtgtgtgaccctaggatagcagcatagcataactattcattcatacacatctctttctatgtccctgtcaccatcatcatcacttcttatgcttgt |
709 |
Q |
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| T |
31792227 |
aagtgtgtgtgaccctaggat---agcatagcataactattcattcatacacatctctttctatgtccctgtcaccatcatcatcacttcttatgcttgt |
31792323 |
T |
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| Q |
710 |
gcctgt |
715 |
Q |
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| T |
31792324 |
gcctgt |
31792329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 31791638 - 31791768
Alignment:
| Q |
9 |
tgagatgaagaagaagctgcgtagtttagtgataaagactccatgtttgcatagaccattcccattgaagaaaaagaagaagaacctaaaacatgtaaaa |
108 |
Q |
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| T |
31791638 |
tgagatgaagaagaagctgcatagtttagtgataaagactccatgtttgcatagaccattcccattgaagaaaaagaagaagaacctaaaacatgtaaaa |
31791737 |
T |
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| Q |
109 |
gggtttgaactttgaagttatgaaggctctt |
139 |
Q |
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| T |
31791738 |
gggtttgaactttgaagttatgaaggctctt |
31791768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 31791794 - 31791879
Alignment:
| Q |
171 |
ttgaacaattgaagtagttaggtgtacagactgaggcaatgacacttgcattctaattttattttaatttaagcagttgctgtcag |
256 |
Q |
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| T |
31791794 |
ttgaacaattgaagtagttaggtgtacagactgaggcaatgacacttgcattctaattttattttaatttaagcagttgctgtcag |
31791879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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