View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_high_6 (Length: 566)
Name: NF2639_high_6
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 7902464 - 7901917
Alignment:
| Q |
1 |
actactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7902464 |
actactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctcca |
7902365 |
T |
|
| Q |
101 |
ttgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaataaagattttattctcttgtaaatataattaaatattttgtatttgtacaaatt |
200 |
Q |
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| T |
7902364 |
ttgcaaatgtgtctagaaaattgaagcaaattaattgaacttcaaataaagaatttattctcttgtaactataattaaatattttgtatttgtacaaatt |
7902265 |
T |
|
| Q |
201 |
gtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcagaacaaggaaatagtggtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7902264 |
gtattcagcctgttaattagatctacggtatagcatagtctatttaaaactgtgctcgactaatttttcttacgcttctcagaacaaggaaatagtggtc |
7902165 |
T |
|
| Q |
301 |
ctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaatctcttccacatcattgttccaccattc |
400 |
Q |
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| T |
7902164 |
ctggttttccattgatcgtatgtgcatctgacatatttggtggcaaccccaatttgttcccttgcttttcaatctcttccacatcattgttccaccattc |
7902065 |
T |
|
| Q |
401 |
acctattggatgcagaaacaattagtacatcaactttcatacttcttatttcatccgatgaatctttataatacnnnnnnnnggaaaaatgaatctttat |
500 |
Q |
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| T |
7902064 |
acctattgcatgcagaaacaattagtacatcaactttcatacttcttatttcatcccatgaatctttataatacttttttttggaaaaatgaatctttat |
7901965 |
T |
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| Q |
501 |
aatacttacctaagacaatttcgaattctctagctggctgtgggaaag |
548 |
Q |
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| T |
7901964 |
aatacttacctaagacaatttcgaattctctagctggctgtgggaaag |
7901917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 400
Target Start/End: Complemental strand, 7891880 - 7891747
Alignment:
| Q |
267 |
ttcttacgcttctcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgct |
366 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||| || ||| ||||| | |
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| T |
7891880 |
ttcttacgtttctcggaacaaggaaagagtggtcctggcttcccattgatcgtatgtgcatccgacatatttggtggcaaccccatttggttcccttggt |
7891781 |
T |
|
| Q |
367 |
tttcaatctcttccacatcattgttccaccattc |
400 |
Q |
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|| | |||||||||||||| |||| ||||||||| |
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| T |
7891780 |
ttactatctcttccacatctttgtgccaccattc |
7891747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 7892191 - 7892072
Alignment:
| Q |
1 |
actactgtcatgttgtgacccgcaatggcaaagaaaagctcatcgttgagggcagcgttgacgattctcatgaggtatgtcttcccttgttctacctcca |
100 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||||||||| || ||||| || |||| |||||| | || |||||||| || | || ||||||| |
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| T |
7892191 |
actactgtcatgttgtgaccagcaagggaaaagaaaagctcatcattaagggctgcattgatgattcttagcagatatgtcttgcccttctcaacctcca |
7892092 |
T |
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| Q |
101 |
ttgcaaatgtgtctagaaaa |
120 |
Q |
| |
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||||| |||| ||||||||| |
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| T |
7892091 |
ttgcatatgtatctagaaaa |
7892072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 279 - 548
Target Start/End: Complemental strand, 31214165 - 31213896
Alignment:
| Q |
279 |
tcagaacaaggaaatagtggtcctggttttccattgatcgtatgtgcatctgacacatttggtggcaaccccaatttgtttccttgcttttcaatctctt |
378 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
31214165 |
tcagaacaaggaaatagcggtcctggttttccattgatcgtatgtgcatctgacatatttggtgacaaccccatattgtttccttgattttcaatctctt |
31214066 |
T |
|
| Q |
379 |
ccacatcattgttccaccattcacctattggatgcagaaacaattagtacatcaactttcatacttcttatttcatccgatgaatctttataatac---- |
474 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31214065 |
ccacatcattgttccaccattcacctattgcatgcagaaacaattagtatatcaactttcatacttcttat----tccgatgaatctttataatactttt |
31213970 |
T |
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| Q |
475 |
nnnnnnnnggaaaaatgaatctttataatacttacctaagacaatttcgaattctctagctggctgtgggaaag |
548 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
31213969 |
ttttttttggaaaaatgaatctttataatacttacctaagacaattttgacttctctagctggctgtgggaaag |
31213896 |
T |
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