View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2639_high_7 (Length: 557)

Name: NF2639_high_7
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2639_high_7
NF2639_high_7
[»] chr6 (10 HSPs)
chr6 (3-541)||(12091216-12091754)
chr6 (3-541)||(11757647-11758185)
chr6 (66-460)||(11737812-11738206)
chr6 (246-459)||(11708721-11708934)
chr6 (66-136)||(11664923-11664993)
chr6 (257-317)||(11619895-11619955)
chr6 (66-136)||(11708541-11708611)
chr6 (402-459)||(11630477-11630534)
chr6 (257-316)||(11672266-11672325)
chr6 (402-459)||(11664600-11664657)
[»] chr1 (1 HSPs)
chr1 (65-460)||(44813164-44813559)
[»] chr8 (2 HSPs)
chr8 (257-467)||(16391893-16392103)
chr8 (66-103)||(16391702-16391739)
[»] scaffold0019 (2 HSPs)
scaffold0019 (257-459)||(6892-7094)
scaffold0019 (78-145)||(6713-6780)
[»] scaffold0196 (1 HSPs)
scaffold0196 (257-323)||(14484-14550)


Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 3 - 541
Target Start/End: Original strand, 12091216 - 12091754
Alignment:
Q  3 aagttaattaaacattagtcaaaatatattatttcatcgattacatatgtatggtaaaaataatttaataagcttaccctactaagtatccttcccaatg 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12091216 aagttaattaaacattagtcaaaatatattatttcgtcgattacatatgtatggtaaaaataatttaataagcttaccctactaagtatccttcccaatg 12091315  T
Q  103 gcgtggtatcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaaaccttcgatgattgaattcccaaagcagctgcaagtag 202  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12091316 gtgtggtgtcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaaaccttcgatgattgaattcccaaagcagctgcaagtag 12091415  T
Q  203 agctctgattataatgaaaaccatagaactaactccaatcaacaagtaaactgtaatcaattgtaatgtgctgacttgaggattgtcaacattagcagcc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  12091416 agctctgattataatgaaaaccatagaactaactccaatcaacaagtaaactgtaatcaattgcaatgtgctgacttgaggattgtcaacattagcggcc 12091515  T
Q  303 atccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaaccgacaaagcagtatatgtagccgcttttctggttcagatactgca 402  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |    
T  12091516 atccatgagttttgcgatatctggcagatcacaaatatcacataagaaagagaaccgacaaagtagtatatgtatccgcttttctgattcagatactgta 12091615  T
Q  403 agtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgatcaccatttttagcattagacgacttctctatggaatgttgttt 502  Q
    ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  12091616 agtaaggcttcaatcctgtgtctcctttttctctctcttcttgctcaattaattgatcaccatttttagcattagacgagttctctatggaatattgttt 12091715  T
Q  503 catctctcgactagactttgaatgtattggggttgaagt 541  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  12091716 catctctcgactagactttgaatgtattggtgttgaagt 12091754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 3 - 541
Target Start/End: Complemental strand, 11758185 - 11757647
Alignment:
Q  3 aagttaattaaacattagtcaaaatatattatttcatcgattacatatgtatggtaaaaataatttaataagcttaccctactaagtatccttcccaatg 102  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11758185 aagttaattaaacattagtcaaaatatattatttcatcaattacatatgtatggtaaaaataatttaataagcttaccctactaagtatccttcccaagg 11758086  T
Q  103 gcgtggtatcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaaaccttcgatgattgaattcccaaagcagctgcaagtag 202  Q
    | ||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  11758085 gtgtggtgtcatagaaagacattggtgcatgaaaaagagaattcattaactgtctaaataaaacctttgatgattgaattcccaaagcagctgcaggtag 11757986  T
Q  203 agctctgattataatgaaaaccatagaactaactccaatcaacaagtaaactgtaatcaattgtaatgtgctgacttgaggattgtcaacattagcagcc 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  11757985 agctctgattataatgaaaaccgtagaactaactccaatcaacaagtaaactgtaatcaattgcaatgtgctgacttgaggatcgtcaacattagcagcc 11757886  T
Q  303 atccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaaccgacaaagcagtatatgtagccgcttttctggttcagatactgca 402  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |    
T  11757885 atccatgagttttgcgatatctggcagatcacaaatatcacataagaaagagaaccgacgaagaagtatatgtagccgcttttctgattcagatactgta 11757786  T
Q  403 agtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgatcaccatttttagcattagacgacttctctatggaatgttgttt 502  Q
    ||||||| ||  |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11757785 agtaaggcttccaccctgcgtctcctttttctctctcttcttgctcaatgaattgatcaccatatttagcattagacgacttctctatggaatattgttt 11757686  T
Q  503 catctctcgactagactttgaatgtattggggttgaagt 541  Q
     ||||||||||||||||||||||||||||||||||||||    
T  11757685 aatctctcgactagactttgaatgtattggggttgaagt 11757647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 66 - 460
Target Start/End: Original strand, 11737812 - 11738206
Alignment:
Q  66 tttaataagcttaccctactaagtatccttcccaatggcgtggtatcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaaa 165  Q
    ||||||| |||||||||||||||||||||||||||||| || |  ||||| || |||||||||||  ||||||| || || |||||||||  |||||||     
T  11737812 tttaatatgcttaccctactaagtatccttcccaatggtgtagagtcataaaacgacattggtgctcgaaaaagggagttcattaattgtgaaaataaat 11737911  T
Q  166 ccttcgatgattgaattcccaaagcagctgcaagtagagctctgattataatgaaaaccatagaactaactccaatcaacaagtaaactgtaatcaattg 265  Q
      || |||||||||  ||||||   | | ||||| |||  ||||||||| ||||||||  ||||||||| ||| ||||||||||||| || ||  |||||    
T  11737912 attttgatgattgatatcccaatagaacagcaagaagacttctgattatcatgaaaacagtagaactaattccgatcaacaagtaaattgcaactaattg 11738011  T
Q  266 taatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaaccgacaaag 365  Q
     ||||| ||||||| ||||||||| |||||| | |||||||||||||||||| |||| ||||| || ||| | || || | | |||||||||| |  |||    
T  11738012 caatgttctgactttaggattgtcgacattaactgccatccatgagttttgcaatatttggcaaattacatacattaggtgacaaagagaaccaatcaag 11738111  T
Q  366 cagtatatgtagccgcttttctggttcagatactgcaagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgatc 460  Q
     |||||| |  ||| ||||| || || ||||| || |||||||| |  ||||||||||||||| |||| |||||||||| ||  |||||||||||    
T  11738112 aagtataggatgcctcttttatgattgagatattgtaagtaaggctgcaaccctgtgtctcctctttccctctcttcttccttgattaattgatc 11738206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 459
Target Start/End: Original strand, 11708721 - 11708934
Alignment:
Q  246 aagtaaactgtaatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatctggcagatcacaaatatcagat 345  Q
    |||||||||  |||||| || || ||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||| || | || ||| || || |    
T  11708721 aagtaaactaaaatcaactgcaacgtgctgacacgaggattgtctacattagcagccatccatgagttttgcaatatctgacaaaccagaaaaataaggt 11708820  T
Q  346 aagaaagagaaccgacaaagcagtatatgtagccgcttttctggttcagatactgcaagtaaggttttaaccctgtgtctcctttttctctctcttcttg 445  Q
     |  ||| ||| | || ||| || |||| |||||  |  |||| |||||||| || ||||| || || |||||| |||||||||| ||||| ||||||||    
T  11708821 gaccaagggaagccacgaagaagaatatatagcctttcatctgattcagatattgtaagtacggcttcaaccctttgtctcctttctctctttcttcttg 11708920  T
Q  446 ctcaattaattgat 459  Q
    ||  ||||||||||    
T  11708921 cttgattaattgat 11708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 11664993 - 11664923
Alignment:
Q  66 tttaataagcttaccctactaagtatccttcccaatggcgtggtatcatagaaagacattggtgcatgaaa 136  Q
    ||||||| |||||||||||| ||||||||||||||||| || |  ||||| ||||||||||||||| ||||    
T  11664993 tttaataggcttaccctacttagtatccttcccaatggtgtagcgtcataaaaagacattggtgcacgaaa 11664923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 11619955 - 11619895
Alignment:
Q  257 aatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgc 317  Q
    ||||||||| |||||||||||  | |||| |||||| ||||||||||||||||||||||||    
T  11619955 aatcaattgcaatgtgctgacgaggggatcgtcaactttagcagccatccatgagttttgc 11619895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 11708541 - 11708611
Alignment:
Q  66 tttaataagcttaccctactaagtatccttcccaatggcgtggtatcatagaaagacattggtgcatgaaa 136  Q
    ||||||| |||||||||||| ||||||||||||||||| || |  ||||| |||||||| |||||| ||||    
T  11708541 tttaatatgcttaccctacttagtatccttcccaatggtgtagcgtcataaaaagacatcggtgcacgaaa 11708611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 11630477 - 11630534
Alignment:
Q  402 aagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgat 459  Q
    |||||||| || ||||||| ||||||||| ||||| |||||||||| |||||||||||    
T  11630477 aagtaaggcttcaaccctgcgtctcctttctctctttcttcttgcttaattaattgat 11630534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 11672266 - 11672325
Alignment:
Q  257 aatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttg 316  Q
    ||||||||| || ||||||||  | ||||||||||||||||| |||| ||||||||||||    
T  11672266 aatcaattgcaacgtgctgacacggggattgtcaacattagccgccaaccatgagttttg 11672325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 11664657 - 11664600
Alignment:
Q  402 aagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgat 459  Q
    |||||||| || |||||| |||||||| | ||||| |||||||||| |||||||||||    
T  11664657 aagtaaggcttcaaccctttgtctcctctctctctttcttcttgcttaattaattgat 11664600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 65 - 460
Target Start/End: Complemental strand, 44813559 - 44813164
Alignment:
Q  65 atttaataagcttaccctactaagtatccttcccaatggcgtggtatcatagaaagacattggtgcatgaaaaagagaatttattaattgtccaaataaa 164  Q
    ||||| || |||||||||||||||||||| |||||| ||||||| |||||| || ||||| |||||| ||||||| || |||| ||  |||  ||| |||    
T  44813559 atttagtatgcttaccctactaagtatccgtcccaaaggcgtggaatcataaaacgacataggtgcacgaaaaagggagtttagtagctgtaaaaacaaa 44813460  T
Q  165 accttcgatgattgaattcccaaagcagctgcaagtagagctctgattataatgaaaaccatagaactaactccaatcaacaagtaaactgtaatcaatt 264  Q
      ||| || |||||||  ||||||||| ||| ||  |||  ||| || |  | ||| |   | ||| |||||||||| ||||||||||||  |||||||     
T  44813459 gactttgaagattgaagacccaaagcaactgtaaaaagacttctcatcaataagaatattgttgaagtaactccaataaacaagtaaactagaatcaatc 44813360  T
Q  265 gtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaaccgacaaa 364  Q
      || ||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |  ||||||||||| |  | ||||| |||| | ||  |    
T  44813359 tcaaagtggtgactttaggattgtcaacattagcagccatccaagagttttgcaatatctgaccaatcacaaatataatgtgagaaatagaagccacgga 44813260  T
Q  365 gcagtatatgtagccgcttttctggttcagatactgcaagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaattgatc 460  Q
    | ||||||  || ||  | |||||  |||||||||| ||||||||  | ||||||  ||||||| | |||||||||||||||| ||| ||||||||    
T  44813259 gaagtatacatatcctttgttctgactcagatactgtaagtaaggcctaaaccctcggtctcctatctctctctcttcttgcttaatcaattgatc 44813164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 467
Target Start/End: Original strand, 16391893 - 16392103
Alignment:
Q  257 aatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaa 356  Q
    |||||| || || ||||||||  |||||||||| ||||| || ||||||||  |||||||| |||||||||| | || ||| || |  | |  ||| |||    
T  16391893 aatcaactggaacgtgctgacacgaggattgtctacatttgctgccatccacaagttttgcaatatctggcataccaaaaaaataaagtgaccaagtgaa 16391992  T
Q  357 ccgacaaagcagtatatgtagccgcttttctggttcagatactgcaagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaatt 456  Q
     | |||||| || |||| |||||  |  |||| |||||||| || |||||||| || |||||| |||||||||| ||||| |||||||||| ||||||||    
T  16391993 gccacaaagaagaatatatagcctttcatctgattcagatattgtaagtaaggcttcaaccctttgtctcctttctctctttcttcttgcttaattaatt 16392092  T
Q  457 gatcaccattt 467  Q
    ||| |||||||    
T  16392093 gattaccattt 16392103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 16391702 - 16391739
Alignment:
Q  66 tttaataagcttaccctactaagtatccttcccaatgg 103  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  16391702 tttaatatgcttaccctacttagtatccttcccaatgg 16391739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 459
Target Start/End: Original strand, 6892 - 7094
Alignment:
Q  257 aatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatctggcagatcacaaatatcagataagaaagagaa 356  Q
    ||||||| | |||||||||||  | |||||||||||||||| ||||||||| ||||||||| ||||||| || | |||||| || || | | ||||| ||    
T  6892 aatcaatcgcaatgtgctgacaaggggattgtcaacattagaagccatccacgagttttgcaatatctgacaaaacacaaaaataaggtgacaaagaaaa 6991  T
Q  357 ccgacaaagcagtatatgtagccgcttttctggttcagatactgcaagtaaggttttaaccctgtgtctcctttttctctctcttcttgctcaattaatt 456  Q
     |   | || |  |||| |||||  |  |||| |||||||| || |||||||| || || |||||||| ||||| |||||||||||||| | ||| ||||    
T  6992 gccgtagagaataatatatagcctttcatctgattcagatattgtaagtaaggcttcaatcctgtgtcgcctttctctctctcttcttgatgaatcaatt 7091  T
Q  457 gat 459  Q
    |||    
T  7092 gat 7094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 6713 - 6780
Alignment:
Q  78 accctactaagtatccttcccaatggcgtggtatcatagaaagacattggtgcatgaaaaagagaatt 145  Q
    |||||||||||||||||||||||||| || | |||||| || ||||| ||||||||||| || |||||    
T  6713 accctactaagtatccttcccaatggtgttgaatcataaaatgacataggtgcatgaaagagggaatt 6780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 14550 - 14484
Alignment:
Q  257 aatcaattgtaatgtgctgacttgaggattgtcaacattagcagccatccatgagttttgcgatatc 323  Q
    ||||||||  |||| |||||| || ||||||||||| ||||||||||||||||| |||||| |||||    
T  14550 aatcaatttcaatgcgctgacatgtggattgtcaacgttagcagccatccatgaattttgcaatatc 14484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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