View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2639_low_1 (Length: 1361)
Name: NF2639_low_1
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_1 |
 | |
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| [»] scaffold0178 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 750
Target Start/End: Complemental strand, 26462260 - 26461523
Alignment:
| Q |
18 |
gaatacattgtaagagagaataacatcatgtggtg-tataatcagagaggcagcagtgatgatgagtggattgacaatttttctaaaattttagatgcgt |
116 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || |
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|
| T |
26462260 |
gaatacattgtaagggagaacaacatcatgcggtggtatcatcagagaggcagcagtgatgatgagtggattgacaacgtctctaaaattttagatgggt |
26462161 |
T |
|
| Q |
117 |
gtagttttattattattaggaaaatacnnnnnnngagtaaattattagaaaaatatcaacgagtgcatttgaatactctttaaaaatcataagttataag |
216 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26462160 |
acagttttattattataaggaaaatactttttttgagtaaattattagaaaaatactaacgagtgcatttgaatactctttaaaaatcataagttataag |
26462061 |
T |
|
| Q |
217 |
tatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacattttatctaaaaattgtctaatttaaaatatttgaatactacatgacnn |
316 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26462060 |
tatttataaaaatatatgtgttcaatacattaaaaatcaaaatatttaacatttttttaaaaaattgtttaatttaaaatatttgaatactacatgactt |
26461961 |
T |
|
| Q |
317 |
nnnnnn-attctataatatccgctggacgttataaatcaaattatcgaaatatatgtacctaaaaacatttgatgaataaacacttaacttcatc---ta |
412 |
Q |
| |
|
| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
26461960 |
tttttttactctataatatccgctgaacgttataactcaaattatcaaaatatatgtacctaagaacatttgatgaataaacacttaacttcatcatcta |
26461861 |
T |
|
| Q |
413 |
ttgtaagtcaaatttatggacatctattgagattaaattaaatccaactacatttcttaatcgagaataagtcagtgtccttctcaatgggtcagtttcc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461860 |
ttgtaagtcaaatttatggacatctattgagattaaattaaatctaactacatttcttaatcgagaataagtcagtgtccttctcaatgggtcagtttcc |
26461761 |
T |
|
| Q |
513 |
acctaaaacaattttataattggtgattaatttgtcttttgttaacaagaagttattgttacaacaacaatccatactttaacttacatctaaatctaaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461760 |
acctaaaacaattttataattggtgattaatttgtcttttgttaacaagaagttattgttacaacaacaatccatactttaacttacatctaaatctaaa |
26461661 |
T |
|
| Q |
613 |
ctaaaaatccttgaccccctcaacatcggccactgaatccttccaatgttcttagctttctcatctctccacgtggcacttacaccctattcataggcct |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461660 |
ctaaaaatccttgaccccctcaacatcggccactgaatccttccaatgttcttagctttctcatctctccacgtggcacttacaccctattcataggcct |
26461561 |
T |
|
| Q |
713 |
atgccggttccgattagtcatcatcctcaaacatatac |
750 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26461560 |
atgccggttccgattagtcatcatcctcaaacatatac |
26461523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 789 - 1345
Target Start/End: Complemental strand, 26461484 - 26460931
Alignment:
| Q |
789 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgacgtaaa |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26461484 |
tcacataacttgttacattagtttactagatttgatattaattattagcacacggtccccaatcaataattcttctatacaccacctatattgatgtaaa |
26461385 |
T |
|
| Q |
889 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
988 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461384 |
cttggctttaaattgactttcataacaaccataagttagttgagtagcccttcttaaaaaggaagaccctatgggatgctaatatacccattttcattag |
26461285 |
T |
|
| Q |
989 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgg |
1088 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461284 |
tgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgg |
26461185 |
T |
|
| Q |
1089 |
gaagattgagagattgtattggtcagtgagtgcaagttatgtcatgagagccaatcctggttattatgtgtcactcatcatgccattgcctcaagaacaa |
1188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461184 |
gaagattgagagattgtattggtcagtgagtgcaagttatgtcatgagagcaaatcctggttattatgtgtcactcatcatgccattgcctcaagaacaa |
26461085 |
T |
|
| Q |
1189 |
gaaggagagaatagtagtaataatgaggtgaagaagcctgtgcttttcactcgtgttaagttgcttaagcctgatgacactctcactttaggacatgctt |
1288 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26461084 |
gaaggagagaat---agtaataatgaggtgaagaagcctgtgcttttcactcgtgttaagttgcttaagcctgatgacactctcactttaggacatgctt |
26460988 |
T |
|
| Q |
1289 |
ataggctcatcacaactcaaggtagtttctttgttttcaatggtctgtgtttgtttt |
1345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26460987 |
ataggctcatcacaactcaaggtagtttctttgttttcaatggtctgtgtttgtttt |
26460931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 8108263 - 8108320
Alignment:
| Q |
214 |
aagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
271 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
8108263 |
aagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttt |
8108320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 40065772 - 40065856
Alignment:
| Q |
187 |
gaatactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
271 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||||||||||||| |||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
40065772 |
gaatactatttaagaatcataagtggtaagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttt |
40065856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 29866443 - 29866494
Alignment:
| Q |
212 |
ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
263 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
29866443 |
ataagtatttatgaaaatgtatgtattcaatatatttaaaatcaaaatattt |
29866494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 25958538 - 25958464
Alignment:
| Q |
189 |
atactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
263 |
Q |
| |
|
||||| ||||| || ||||| | |||||||||| ||||||||| |||| ||||||||||| |||||||||||||| |
|
|
| T |
25958538 |
atactttttaagaaccataaatgataagtatttttaaaaatgtgtgtgatcaatatattgtaaatcaaaatattt |
25958464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 50775070 - 50774994
Alignment:
| Q |
195 |
tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaacatttt |
271 |
Q |
| |
|
||||| |||||||||| |||| ||||||| ||||| | ||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
50775070 |
tttaagaatcataagtaataaatatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttt |
50774994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 2137300 - 2137227
Alignment:
| Q |
190 |
tactctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatattt |
263 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||| ||||| | ||| |||||||||| |||||||||||||| |
|
|
| T |
2137300 |
tactgtttaagaatcataagtaataagtatttatgaaaatatgtgtaatcaatatattataaatcaaaatattt |
2137227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 42627941 - 42628012
Alignment:
| Q |
195 |
tttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaac |
266 |
Q |
| |
|
||||||||| |||||| |||||||| || ||||| | | | |||||| ||||||||||||||||||||||| |
|
|
| T |
42627941 |
tttaaaaattataagtggtaagtattaatgaaaatatgtatattcaatgtattgaaaatcaaaatatttaac |
42628012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1237 - 1312
Target Start/End: Complemental strand, 15406954 - 15406879
Alignment:
| Q |
1237 |
actcgtgttaagttgcttaagcctgatgacactctcactttaggacatgcttataggctcatcacaactcaaggta |
1312 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||| | | | || |||||||||||||||||||| | |||||||| |
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|
| T |
15406954 |
actcgtgttaagttgcttaggcctaatgaaactcttaatcttggtcatgcttataggctcatcactaatcaaggta |
15406879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1033 - 1180
Target Start/End: Complemental strand, 15407146 - 15406999
Alignment:
| Q |
1033 |
atggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgggaagattgagagattgtattggtcagtgagtgcaagttatgtca |
1132 |
Q |
| |
|
||||| ||||||||| | | |||||||||| || ||||||||||| || |||||||||| || |||||||||||| |||| | ||| ||| | || | |
|
|
| T |
15407146 |
atgggaaattgtcaagctgttgatgctgcagttcttgtgatccaacatccatgtgggaagatagatagattgtattggccagtaactgctagtgaagtta |
15407047 |
T |
|
| Q |
1133 |
tgagagccaatcctggttattatgtgtcactcatcatgccattgcctc |
1180 |
Q |
| |
|
||| | ||||||||||| | ||||| ||| | || |||||||| |||| |
|
|
| T |
15407046 |
tgaaaaccaatcctggtcactatgtttcattgattatgccattacctc |
15406999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 34652463 - 34652534
Alignment:
| Q |
194 |
ctttaaaaatcataagttataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa |
265 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||||| ||||| ||||||||||| ||||| ||| ||||||| |
|
|
| T |
34652463 |
ctttaaaaattataagtaatagatttttataaaaatatatgtattcaatatattaaaaattaaactatttaa |
34652534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 15961 - 15908
Alignment:
| Q |
212 |
ataagtatttataaaaatgtatgtgttcaatatattgaaaatcaaaatatttaa |
265 |
Q |
| |
|
|||| ||||||||||||||| ||| || || |||||||||||||||||||||| |
|
|
| T |
15961 |
ataaatatttataaaaatgtgtgtatttgatgtattgaaaatcaaaatatttaa |
15908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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