View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_10 (Length: 448)
Name: NF2639_low_10
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 34052533 - 34052954
Alignment:
| Q |
13 |
aatattgaccc-ttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaagggaccatgaataaatgattgaaattaacattcact |
111 |
Q |
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| T |
34052533 |
aatattgaccccttttaggtgtgtgtaaactcatagtacaaattgtcaacatctttacaactaagggaccatgaataaatgattgaaattaacattcact |
34052632 |
T |
|
| Q |
112 |
tatgcattcattcaaacttatgatcttaatataccaaaaataccatgttattatatacaaacaatttgattaacacttttattat-atgtataggttcat |
210 |
Q |
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| T |
34052633 |
tatgcattcattcaaacttatgatcttaatataccaaaaataccatgttattatatacaaacaatttgatcaacacttttattattatgtataggttcat |
34052732 |
T |
|
| Q |
211 |
ccaaactcttatgcattagtggtgagcatggagaacatcacactcaactggtattttggcaatgacagatcaatgttagtatcaaattgtctgtttagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34052733 |
ccaaactcttatgcattagtggtgagcatggagaacatcacactcaactggtatttcggcaatgacagatcaatgttagtatcaaattgtctgtttagaa |
34052832 |
T |
|
| Q |
311 |
tgggaggatcagcaattctcctctccaacaaagcttctgacagcaaaagagctaaataccaactgatccacaccgtccgaacacataaaggcgcggacga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34052833 |
tgggaggatcagcaattctcctctccaacaaagcttctgacagcaaaagagctaaataccaactgatccacaccgtccgaacacataaaggcgcggacga |
34052932 |
T |
|
| Q |
411 |
cagatcatacggttgtgtcttc |
432 |
Q |
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| T |
34052933 |
cagatcatatggttgtgtcttc |
34052954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 15239023 - 15239164
Alignment:
| Q |
200 |
tataggttcatccaaactcttatgcattagtggtgagcatggagaacatcacactcaactggtattttggcaatgacagatcaatgttagtatcaaattg |
299 |
Q |
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||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||| |||| ||||||| |
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| T |
15239023 |
tataggtacatccaaactcatatgccttagtagtgagcatggagaacataacactaaactggtatttcggcaacgacagatcaatgctagtgccaaattg |
15239122 |
T |
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| Q |
300 |
tctgtttagaatgggaggatcagcaattctcctctccaacaa |
341 |
Q |
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| T |
15239123 |
tctctttagaatgggaggagcagcagttctcctctccaacaa |
15239164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 31333432 - 31333480
Alignment:
| Q |
203 |
aggttcatccaaactcttatgcattagtggtgagcatggagaacatcac |
251 |
Q |
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| T |
31333432 |
aggttcatcctaactcgtatgcattggttgttagcatggagaacatcac |
31333480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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