View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2639_low_11 (Length: 444)

Name: NF2639_low_11
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2639_low_11
NF2639_low_11
[»] chr2 (19 HSPs)
chr2 (1-440)||(12140215-12140654)
chr2 (96-215)||(8487157-8487276)
chr2 (370-416)||(28677631-28677677)
chr2 (359-416)||(39621992-39622049)
chr2 (228-264)||(41880660-41880696)
chr2 (378-429)||(4350750-4350801)
chr2 (365-416)||(8187425-8187476)
chr2 (365-416)||(16398443-16398494)
chr2 (232-263)||(39621864-39621895)
chr2 (223-269)||(7043875-7043920)
chr2 (382-416)||(16451183-16451217)
chr2 (365-415)||(45314915-45314965)
chr2 (230-263)||(626369-626402)
chr2 (231-264)||(12313330-12313363)
chr2 (359-416)||(13220474-13220531)
chr2 (387-416)||(27317449-27317478)
chr2 (263-295)||(43808501-43808533)
chr2 (230-298)||(44443212-44443280)
chr2 (365-409)||(44606089-44606133)
[»] chr8 (15 HSPs)
chr8 (361-416)||(8629499-8629554)
chr8 (359-416)||(32840957-32841015)
chr8 (359-416)||(779033-779090)
chr8 (381-416)||(10120820-10120855)
chr8 (230-264)||(4389822-4389856)
chr8 (230-264)||(31751714-31751748)
chr8 (232-269)||(2840239-2840276)
chr8 (232-269)||(2844926-2844963)
chr8 (231-264)||(10383710-10383743)
chr8 (359-416)||(30918154-30918210)
chr8 (234-294)||(1469908-1469968)
chr8 (359-415)||(8255433-8255489)
chr8 (378-410)||(13459705-13459737)
chr8 (234-262)||(33714380-33714408)
chr8 (228-264)||(34236039-34236074)
[»] chr7 (14 HSPs)
chr7 (359-416)||(19022556-19022614)
chr7 (370-416)||(36537960-36538006)
chr7 (230-312)||(31002913-31002994)
chr7 (230-269)||(425974-426013)
chr7 (381-416)||(23214918-23214953)
chr7 (359-409)||(34035958-34036009)
chr7 (238-269)||(35056977-35057008)
chr7 (359-409)||(15740390-15740440)
chr7 (378-411)||(19719066-19719099)
chr7 (383-416)||(25670558-25670591)
chr7 (374-414)||(24895512-24895552)
chr7 (229-269)||(32156886-32156926)
chr7 (269-297)||(45020122-45020150)
chr7 (232-264)||(46945775-46945807)
[»] chr6 (16 HSPs)
chr6 (359-416)||(33887871-33887928)
chr6 (378-431)||(2263252-2263305)
chr6 (359-415)||(4080957-4081013)
chr6 (230-269)||(7946026-7946065)
chr6 (359-409)||(1575936-1575986)
chr6 (359-409)||(31624131-31624181)
chr6 (370-416)||(33832245-33832291)
chr6 (382-415)||(2455324-2455357)
chr6 (382-415)||(9559511-9559544)
chr6 (378-415)||(20368153-20368190)
chr6 (383-416)||(32577958-32577991)
chr6 (360-408)||(769180-769228)
chr6 (359-415)||(8035121-8035177)
chr6 (230-293)||(17241365-17241426)
chr6 (384-416)||(31686335-31686367)
chr6 (230-262)||(31776425-31776457)
[»] chr4 (22 HSPs)
chr4 (232-293)||(1965834-1965895)
chr4 (359-413)||(46247246-46247300)
chr4 (383-416)||(31642258-31642291)
chr4 (230-298)||(11877717-11877784)
chr4 (261-297)||(32920509-32920545)
chr4 (228-264)||(39178393-39178429)
chr4 (231-271)||(54214894-54214934)
chr4 (360-415)||(37863927-37863982)
chr4 (230-264)||(19039659-19039693)
chr4 (359-413)||(46013288-46013342)
chr4 (230-264)||(47399412-47399446)
chr4 (365-410)||(1137759-1137804)
chr4 (383-416)||(2996638-2996671)
chr4 (232-265)||(11155554-11155587)
chr4 (232-269)||(39886726-39886763)
chr4 (385-422)||(55437144-55437181)
chr4 (232-264)||(6466188-6466220)
chr4 (370-410)||(28615387-28615427)
chr4 (228-268)||(34430827-34430866)
chr4 (228-264)||(45104564-45104600)
chr4 (375-415)||(45214428-45214468)
chr4 (380-416)||(55064898-55064934)
[»] chr5 (18 HSPs)
chr5 (232-293)||(18857515-18857574)
chr5 (230-264)||(38105021-38105055)
chr5 (359-416)||(499703-499760)
chr5 (382-422)||(41535446-41535486)
chr5 (230-269)||(32927975-32928014)
chr5 (229-264)||(34590386-34590421)
chr5 (263-297)||(6734003-6734037)
chr5 (378-412)||(17368736-17368770)
chr5 (228-269)||(3255766-3255807)
chr5 (232-265)||(5559610-5559643)
chr5 (230-263)||(11715018-11715051)
chr5 (374-410)||(12857315-12857352)
chr5 (230-263)||(26796341-26796374)
chr5 (230-263)||(26799859-26799892)
chr5 (230-263)||(26807409-26807442)
chr5 (232-269)||(40731174-40731211)
chr5 (380-416)||(10640016-10640052)
chr5 (375-410)||(12857682-12857718)
[»] chr3 (26 HSPs)
chr3 (359-416)||(34707468-34707525)
chr3 (232-265)||(46434749-46434782)
chr3 (360-416)||(24281089-24281145)
chr3 (380-416)||(46778162-46778198)
chr3 (370-422)||(47249452-47249504)
chr3 (230-269)||(10105722-10105761)
chr3 (226-264)||(19679463-19679501)
chr3 (359-416)||(21367708-21367766)
chr3 (230-263)||(9995853-9995886)
chr3 (230-263)||(10131539-10131572)
chr3 (230-263)||(10216870-10216903)
chr3 (230-263)||(10220389-10220422)
chr3 (383-416)||(25182959-25182992)
chr3 (359-416)||(37273175-37273232)
chr3 (383-416)||(40880920-40880953)
chr3 (228-269)||(46886850-46886890)
chr3 (232-269)||(48387458-48387495)
chr3 (359-407)||(5391920-5391968)
chr3 (380-416)||(14548693-14548729)
chr3 (383-415)||(19679301-19679333)
chr3 (232-264)||(31762206-31762238)
chr3 (231-294)||(37138241-37138302)
chr3 (382-410)||(37389248-37389276)
chr3 (387-415)||(47132063-47132091)
chr3 (263-295)||(49772781-49772813)
chr3 (388-416)||(50211805-50211833)
[»] chr1 (13 HSPs)
chr1 (359-416)||(42336656-42336713)
chr1 (373-416)||(5741662-5741705)
chr1 (359-414)||(37811893-37811948)
chr1 (378-416)||(4481990-4482028)
chr1 (230-264)||(18327267-18327301)
chr1 (359-416)||(29635388-29635445)
chr1 (232-269)||(35925585-35925622)
chr1 (359-408)||(35925731-35925780)
chr1 (232-269)||(48064189-48064226)
chr1 (230-262)||(33527291-33527323)
chr1 (228-264)||(34404928-34404964)
chr1 (380-416)||(37473466-37473502)
chr1 (231-263)||(48536780-48536812)
[»] scaffold0608 (1 HSPs)
scaffold0608 (378-416)||(9609-9647)


Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 12140215 - 12140654
Alignment:
Q  1 ctccttgtgttttgaagaaaggagttactaaggaagaaggtggttctattattgataagcttaaggaattgggtgcaactgttgttcttgaatgattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12140215 ctccttgtgttttgaagaaaggagttactaaggaagaaggtggttctattattgataagcttaaggaattgggtgcaactgttgttcttgaatgattttt 12140314  T
Q  101 ggttaattgtagaattagttgttatttgggattattgttttattagaaaaggtgcaatttttatttcatggaattgtgtctgctagatgtttgatgaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12140315 ggttaattgtagaattagttgttatttgggattattgttttattagaaaaggtgcaatttttatttcatggaattgtgtctgctagatgtttgatgaaat 12140414  T
Q  201 gtgcaagagttgttgcagttattatatgtcctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctatttttatttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12140415 gtgcaagagttgttgcagttattatatgtcctgtttggataaacaacttattttgcagcttatatcatataagtttttatgcataagctatttttatttt 12140514  T
Q  301 ataataaaagattaaactaagtcaaattattttttcgtattggctacaaacggatttcataagttgaagacaacttgtgaaaatgtcataagttgttttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12140515 ataataaaagattaaactaagtcaaattattttttcgtattggctacaaacggatttcataagttgaagacaacttgtaaaaatgtcataagttgttttc 12140614  T
Q  401 ataagttctctcaaactatttcgtaagtgttcatctcagt 440  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  12140615 ataagttctctcaaactatttcgtaagtgtttatgtcagt 12140654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 8487157 - 8487276
Alignment:
Q  96 tttttggttaattgtagaattagttgttatttgggattattgttttattagaaaaggtgcaatttttatttcatggaattgtgtctgctagatgtttgat 195  Q
    ||||||| || ||||||| ||| ||||| ||||||||||||||||||| | |||| | |  | |||||||| ||||||||||||||  | | |||||||     
T  8487157 tttttgggtagttgtagagttaattgttttttgggattattgttttatgataaaatgagtcagttttatttgatggaattgtgtctttttggtgtttgaa 8487256  T
Q  196 gaaatgtgcaagagttgttg 215  Q
    ||||||||||||||||||||    
T  8487257 gaaatgtgcaagagttgttg 8487276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 28677677 - 28677631
Alignment:
Q  370 acaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  28677677 acaacttatgaaaatgtcataagctgttttcataagttctcccaaac 28677631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 39621992 - 39622049
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| |||| || ||||  |||||||||||||||||||||||||||||||||    
T  39621992 ataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaac 39622049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 41880696 - 41880660
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||||| |||||||||||||    
T  41880696 gtcctgtttggataaacaacttactttgcagcttata 41880660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 4350750 - 4350801
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctcaaactatttcgtaagtg 429  Q
    |||| |||||||||| ||||||||||||||||||||||| || || ||||||    
T  4350750 tgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtg 4350801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 8187476 - 8187425
Alignment:
Q  365 tgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||| |||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  8187476 tgaaaacaacttgcgaaaatttcataagttgtattcataagttctttcaaac 8187425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Complemental strand, 16398494 - 16398443
Alignment:
Q  365 tgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||| ||| || | ||||||||||||||||||||| ||||||||||||    
T  16398494 tgaagacagcttatggacatgtcataagttgttttcatatgttctctcaaac 16398443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 263
Target Start/End: Original strand, 39621864 - 39621895
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttat 263  Q
    ||||||||||||||||||||||||||||||||    
T  39621864 tgtttggataaacaacttattttgcagcttat 39621895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 7043920 - 7043875
Alignment:
Q  223 tatatgtcctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  7043920 tataagtcctgtttggataaacaactta-tttgcagcttataacata 7043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 16451183 - 16451217
Alignment:
Q  382 aatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||||||||| |||||    
T  16451183 aatgtcataagttgttttcataagttctcccaaac 16451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 45314915 - 45314965
Alignment:
Q  365 tgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||| ||||||| | || |||||||||||||||| ||||||||||||||||    
T  45314915 tgaaaacaacttataaatatgtcataagttgtttacataagttctctcaaa 45314965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 626402 - 626369
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||| |||||||    
T  626402 cctgtttggataaacaacttattttgtagcttat 626369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 12313363 - 12313330
Alignment:
Q  231 ctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||| ||||||||||||||||||    
T  12313363 ctgtttggataaacatcttattttgcagcttata 12313330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 13220474 - 13220531
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||| || ||| ||| |||| | ||||||||||||||| ||||||||||||||||    
T  13220474 ataagtttaaaacagcttatgaacaagtcataagttgtttttataagttctctcaaac 13220531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Original strand, 27317449 - 27317478
Alignment:
Q  387 cataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||||||||||    
T  27317449 cataagttgttttcataagttctctcaaac 27317478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 43808501 - 43808533
Alignment:
Q  263 tatcatataagtgtttatgcataagctattttt 295  Q
    ||||||||||||||||||| |||||||||||||    
T  43808501 tatcatataagtgtttatgtataagctattttt 43808533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 44443212 - 44443280
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctatttttatt 298  Q
    ||||||||||||||||||||  ||||||  |||||    ||||||| ||||| ||||||||||||||||    
T  44443212 cctgtttggataaacaacttgatttgcaatttatagatgataagtgcttatgtataagctatttttatt 44443280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 44606133 - 44606089
Alignment:
Q  365 tgaagacaacttgtgaaaatgtcataagttgttttcataagttct 409  Q
    |||| ||||||| || | |||||||||||||||||||||||||||    
T  44606133 tgaaaacaacttatggacatgtcataagttgttttcataagttct 44606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 8629499 - 8629554
Alignment:
Q  361 aagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||    
T  8629499 aagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaac 8629554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 32841015 - 32840957
Alignment:
Q  359 ataagttgaagacaacttgtgaa-aatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  32841015 ataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaac 32840957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 779090 - 779033
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||||||| |||| |||||||||||||||||| |||||||| ||||||    
T  779090 ataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaac 779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 416
Target Start/End: Original strand, 10120820 - 10120855
Alignment:
Q  381 aaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||| |||||||||||||||||||||||    
T  10120820 aaatgtcataagctgttttcataagttctctcaaac 10120855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 4389822 - 4389856
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    |||||||||||||| ||||||||||||||||||||    
T  4389822 cctgtttggataaataacttattttgcagcttata 4389856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 31751748 - 31751714
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||| |||||||||||||    
T  31751748 cctgtttggataaacaacttaatttgcagcttata 31751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 2840239 - 2840276
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcata 2840276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 2844926 - 2844963
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcata 2844963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 10383710 - 10383743
Alignment:
Q  231 ctgtttggataaacaacttattttgcagcttata 264  Q
    |||||||||||||||| |||||||||||||||||    
T  10383710 ctgtttggataaacaatttattttgcagcttata 10383743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 30918154 - 30918210
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||||||| ||||| ||||| |||||||||||||||| ||||||||||    
T  30918154 ataagctgaaaacaacttatgaaa-tgtcacaagttgttttcataagctctctcaaac 30918210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 294
Target Start/End: Original strand, 1469908 - 1469968
Alignment:
Q  234 tttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctatttt 294  Q
    ||||| ||||||||||||||||||||||||  ||||||||   ||||| | ||||||||||    
T  1469908 tttggttaaacaacttattttgcagcttattgcatataagcacttatgaacaagctatttt 1469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 8255433 - 8255489
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    ||||| |||| ||||||| || | ||||||| |||||||| ||||||||||||||||    
T  8255433 ataaggtgaaaacaacttatgcacatgtcattagttgtttccataagttctctcaaa 8255489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 410
Target Start/End: Original strand, 13459705 - 13459737
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctc 410  Q
    ||||||||||||||| |||||||||||||||||    
T  13459705 tgaaaatgtcataagctgttttcataagttctc 13459737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 33714408 - 33714380
Alignment:
Q  234 tttggataaacaacttattttgcagctta 262  Q
    |||||||||||||||||||||||||||||    
T  33714408 tttggataaacaacttattttgcagctta 33714380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 34236039 - 34236074
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34236039 gtcctgtttggataaacaactta-tttgcagcttata 34236074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 19022614 - 19022556
Alignment:
Q  359 ataagttgaagacaacttgtgaaaat-gtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||    
T  19022614 ataagttgaagacaacttatgaaaattgtcataagttgttttcataaattctcccaaac 19022556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 36537960 - 36538006
Alignment:
Q  370 acaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||| |||| |||||||||||||||| |||||||||||||||||    
T  36537960 acaacttatgaacatgtcataagttgtttccataagttctctcaaac 36538006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 31002994 - 31002913
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctattttta-ttttataataaaagat 312  Q
    ||||||||||||||||||||| |||||| |||||| |  ||||| | |||||  ||||||||||||| |||||||| |||||||    
T  31002994 cctgtttggataaacaacttaatttgcatcttatagc--ataagcgcttatgtgtaagctatttttatttttataacaaaagat 31002913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 426013 - 425974
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  426013 cctgtttggataaataacttattttgcagcttatagcata 425974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 416
Target Start/End: Original strand, 23214918 - 23214953
Alignment:
Q  381 aaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||||||||||| |||||||||||    
T  23214918 aaatgtcataagttgttttcataaattctctcaaac 23214953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 34035958 - 34036009
Alignment:
Q  359 ataagttgaagacaacttgtgaa-aatgtcataagttgttttcataagttct 409  Q
    |||||||||| ||||||| |||| ||||||||||||| ||||||||||||||    
T  34035958 ataagttgaaaacaacttatgaacaatgtcataagttattttcataagttct 34036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 269
Target Start/End: Complemental strand, 35057008 - 35056977
Alignment:
Q  238 gataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||||||||||||||||||||    
T  35057008 gataaacaacttattttgcagcttatatcata 35056977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 15740440 - 15740390
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttct 409  Q
    ||||||| || ||| ||| |||| |||||||||||||||||||||||||||    
T  15740440 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 15740390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 19719066 - 19719099
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctct 411  Q
    |||| |||||||||||||||||||||||||||||    
T  19719066 tgaacatgtcataagttgttttcataagttctct 19719099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 25670591 - 25670558
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||||| ||||||||    
T  25670591 atgtcataagttgttttcataagttttctcaaac 25670558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 24895512 - 24895552
Alignment:
Q  374 cttgtgaaaatgtcataagttgttttcataagttctctcaa 414  Q
    |||||||| ||||||| ||||| ||||||||||||||||||    
T  24895512 cttgtgaacatgtcattagttgatttcataagttctctcaa 24895552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 32156886 - 32156926
Alignment:
Q  229 tcctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||| ||||||||||||||||| ||||||||||||| ||||    
T  32156886 tcctatttggataaacaacttaatttgcagcttatagcata 32156926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 45020122 - 45020150
Alignment:
Q  269 ataagtgtttatgcataagctatttttat 297  Q
    |||||||||||||||||||||||||||||    
T  45020122 ataagtgtttatgcataagctatttttat 45020150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 46945775 - 46945807
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||| |||||||||||||    
T  46945775 tgtttggataaacaacttagtttgcagcttata 46945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 33887871 - 33887928
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||| |||||||||||| |||||||||| | ||||||||| |||||||||||    
T  33887871 ataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaac 33887928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 2263252 - 2263305
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctcaaactatttcgtaagtgtt 431  Q
    |||| |||||||| |||||||||||||||||||||||||  |||| ||||||||    
T  2263252 tgaacatgtcatatgttgttttcataagttctctcaaacagtttcttaagtgtt 2263305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 4080957 - 4081013
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||  |||||||||    
T  4080957 ataagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaa 4081013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 7946065 - 7946026
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  7946065 cctgtttggataaacaacttattttgtagcttatagcata 7946026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 1575936 - 1575986
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttct 409  Q
    ||||||| || ||| ||| |||| |||||||||||||||||||||||||||    
T  1575936 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagttct 1575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 31624131 - 31624181
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttct 409  Q
    |||||||||| ||| ||| |||| |||||||||| ||||||||||||||||    
T  31624131 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Complemental strand, 33832291 - 33832245
Alignment:
Q  370 acaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||| | || ||||||||||||||||||||||||||||| ||||    
T  33832291 acaacttataaacatgtcataagttgttttcataagttctcttaaac 33832245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 2455324 - 2455357
Alignment:
Q  382 aatgtcataagttgttttcataagttctctcaaa 415  Q
    ||||| ||||||||||||||||||||||||||||    
T  2455324 aatgtaataagttgttttcataagttctctcaaa 2455357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 9559544 - 9559511
Alignment:
Q  382 aatgtcataagttgttttcataagttctctcaaa 415  Q
    ||||||||||||||||||||||||||||| ||||    
T  9559544 aatgtcataagttgttttcataagttctcccaaa 9559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 20368190 - 20368153
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  20368190 tgaacatgtcataagttgttttcataagttctcccaaa 20368153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 32577991 - 32577958
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||| ||||||||||    
T  32577991 atgtcataagttgttttcataagctctctcaaac 32577958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 769180 - 769228
Alignment:
Q  360 taagttgaagacaacttgtgaaaatgtcataagttgttttcataagttc 408  Q
    ||||||||| ||| ||| |||| |||||||||| |||||||||||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttc 769228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 8035177 - 8035121
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||||||||| |||| || |||  |||||||||||||||||| ||||||||| ||||    
T  8035177 ataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttctcccaaa 8035121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 17241426 - 17241365
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctattt 293  Q
    ||||||||||||| |||| ||||| |||||||||| |  ||||| | |||||||||||||||||    
T  17241426 cctgtttggataagcaacatatttggcagcttatagc--ataagcgcttatgcataagctattt 17241365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 31686367 - 31686335
Alignment:
Q  384 tgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||| ||||||||||||||||    
T  31686367 tgtcataagttgttttgataagttctctcaaac 31686335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 31776457 - 31776425
Alignment:
Q  230 cctgtttggataaacaacttattttgcagctta 262  Q
    |||||||| ||||||||||||||||||||||||    
T  31776457 cctgtttgaataaacaacttattttgcagctta 31776425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 1965834 - 1965895
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctattt 293  Q
    ||||||||||||||||||||||  ||||||||| |||||||||| ||||| |||| ||||||    
T  1965834 tgtttggataaacaacttatttgacagcttatagcatataagtgcttatgaataaactattt 1965895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 46247246 - 46247300
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctca 413  Q
    |||||||||||||||||| | || |||||||||||| |||||||||| |||||||    
T  46247246 ataagttgaagacaacttatcaacatgtcataagttcttttcataagatctctca 46247300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 31642258 - 31642291
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||||||||||||||    
T  31642258 atgtcataagttgttttcataagttctctcaaac 31642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 11877717 - 11877784
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctatttttatt 298  Q
    |||||||| |||||||||||||||||||| ||||| |||| |||  |||||| ||||||||||| ||||    
T  11877717 cctgtttgaataaacaacttattttgcagattatagcata-aagcttttatgaataagctatttctatt 11877784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 32920545 - 32920509
Alignment:
Q  261 tatatcatataagtgtttatgcataagctatttttat 297  Q
    ||||||||||||||||||||| |||||||||||||||    
T  32920545 tatatcatataagtgtttatggataagctatttttat 32920509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 39178429 - 39178393
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||||||||| |||||||||    
T  39178429 gtcctgtttggataaacaacttattttacagcttata 39178393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 54214894 - 54214934
Alignment:
Q  231 ctgtttggataaacaacttattttgcagcttatatcatata 271  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  54214894 ctgtttggataaacaacttaatttgcagcttatagcatata 54214934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 37863982 - 37863927
Alignment:
Q  360 taagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||| |||| ||||||| ||||  ||||||||| ||||||||||||||||||||||    
T  37863982 taaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttctctcaaa 37863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 19039659 - 19039693
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||| |||||||||||||    
T  19039659 cctgtttggataaacaacttaatttgcagcttata 19039693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 46013342 - 46013288
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctca 413  Q
    |||||||||||||||||| | || ||| |||||||| |||||||||| |||||||    
T  46013342 ataagttgaagacaacttatcaacatgccataagttcttttcataagatctctca 46013288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 47399412 - 47399446
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||| |||||||||||||    
T  47399412 cctgtttggataaacaacttagtttgcagcttata 47399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 1137759 - 1137804
Alignment:
Q  365 tgaagacaacttgtgaaaatgtcataagttgttttcataagttctc 410  Q
    |||| ||||||| |||| |||||||||| |||||||||||||||||    
T  1137759 tgaaaacaacttatgaacatgtcataagatgttttcataagttctc 1137804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 2996638 - 2996671
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||| ||||||||||    
T  2996638 atgtcataagttgttttcataagctctctcaaac 2996671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 11155587 - 11155554
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatat 265  Q
    ||||||||||||||||||| ||||||||||||||    
T  11155587 tgtttggataaacaacttactttgcagcttatat 11155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 39886763 - 39886726
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  39886763 tgtttggataaacaaattattttgcagcttatagcata 39886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 55437144 - 55437181
Alignment:
Q  385 gtcataagttgttttcataagttctctcaaactatttc 422  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  55437144 gtcataagttgttttcataagttctttcaaacaatttc 55437181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 6466220 - 6466188
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttata 264  Q
    |||||||||||||||||| ||||||||||||||    
T  6466220 tgtttggataaacaacttcttttgcagcttata 6466188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 28615387 - 28615427
Alignment:
Q  370 acaacttgtgaaaatgtcataagttgttttcataagttctc 410  Q
    ||||||| |||||||||||| || |||||||||||||||||    
T  28615387 acaacttatgaaaatgtcattagctgttttcataagttctc 28615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 34430866 - 34430827
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttatatcat 268  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  34430866 gtcctgtttggttaaacaactta-tttgcagcttatatcat 34430827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 45104600 - 45104564
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||| | |||||||||||||||||    
T  45104600 gtcctgtttggataaactaattattttgcagcttata 45104564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 45214428 - 45214468
Alignment:
Q  375 ttgtgaaaatgtcataagttgttttcataagttctctcaaa 415  Q
    |||||||  |||||||||||| |||||||||||||||||||    
T  45214428 ttgtgaacgtgtcataagttgatttcataagttctctcaaa 45214468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 55064898 - 55064934
Alignment:
Q  380 aaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||||||||| |||||||| |||||    
T  55064898 aaaatgtcataagttgttttcaaaagttctcccaaac 55064934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 18857574 - 18857515
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctattt 293  Q
    |||||||||||||||||||||||||||||| ||   | |||||||||||| |||||||||||    
T  18857574 tgtttggataaacaacttattttgcagcttgta--gtgtaagtgtttatgaataagctattt 18857515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 38105055 - 38105021
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    |||||||||||||||||||||||||||||||||||    
T  38105055 cctgtttggataaacaacttattttgcagcttata 38105021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 499760 - 499703
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||||||||| || |||||||||| ||||||||||||||||| |||||    
T  499760 ataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctcccaaac 499703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 41535446 - 41535486
Alignment:
Q  382 aatgtcataagttgttttcataagttctctcaaactatttc 422  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  41535446 aatgtcataagttgttttcataagttctcccaaactgtttc 41535486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 32927975 - 32928014
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  32927975 cctgtttgaataaacaacttaatttgcagcttatatcata 32928014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 34590421 - 34590386
Alignment:
Q  229 tcctgtttggataaacaacttattttgcagcttata 264  Q
    |||||||||||||||| |||||||||||||||||||    
T  34590421 tcctgtttggataaacgacttattttgcagcttata 34590386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 6734037 - 6734003
Alignment:
Q  263 tatcatataagtgtttatgcataagctatttttat 297  Q
    |||||||||||||||||||||||| ||||||||||    
T  6734037 tatcatataagtgtttatgcataatctatttttat 6734003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 17368736 - 17368770
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctc 412  Q
    |||| ||||||||||||||||||||||||||||||    
T  17368736 tgaacatgtcataagttgttttcataagttctctc 17368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 3255807 - 3255766
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||||||||||||||||||||||| || ||||| ||||    
T  3255807 gtcctgtttggataaacaacttattttgaagtttatagcata 3255766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 5559610 - 5559643
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatat 265  Q
    ||||||||||||||||||| ||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttatat 5559643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 11715051 - 11715018
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    ||||||||||||||||||||| ||||||||||||    
T  11715051 cctgtttggataaacaacttaatttgcagcttat 11715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 12857352 - 12857315
Alignment:
Q  374 cttgtgaaaat-gtcataagttgttttcataagttctc 410  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  12857352 cttgtgaaaattgtcataagttgttttcataagttctc 12857315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 26796341 - 26796374
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  26796341 cctgtttggataaacaacttattttgcaccttat 26796374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 26799859 - 26799892
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  26799859 cctgtttggataaacaacttattttgcaccttat 26799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 26807409 - 26807442
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  26807409 cctgtttggataaacaacttattttgcaccttat 26807442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 40731174 - 40731211
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  40731174 tgtttggataaacaaattattttgcagcttatagcata 40731211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 10640016 - 10640052
Alignment:
Q  380 aaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  10640016 aaaatgtcataagctgttttcataagttctcccaaac 10640052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 410
Target Start/End: Complemental strand, 12857718 - 12857682
Alignment:
Q  375 ttgtgaaaat-gtcataagttgttttcataagttctc 410  Q
    |||||||||| ||||||||||||||||||||||||||    
T  12857718 ttgtgaaaattgtcataagttgttttcataagttctc 12857682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 34707525 - 34707468
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||| ||||||| || | |||||| |||||||||||| ||||||||||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaac 34707468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 46434782 - 46434749
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatat 265  Q
    ||||||||||||||||||||||||||||||||||    
T  46434782 tgtttggataaacaacttattttgcagcttatat 46434749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 24281089 - 24281145
Alignment:
Q  360 taagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||| ||||||| || | || |||||||||||||||||||| ||||||||||    
T  24281089 taagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaac 24281145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 46778198 - 46778162
Alignment:
Q  380 aaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||||||||||| |||||    
T  46778198 aaaatgtcataagttgttttcataagttctcccaaac 46778162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 47249504 - 47249452
Alignment:
Q  370 acaacttgtgaaaatgtcataagttgttttcataagttctctcaaactatttc 422  Q
    ||||||| |||| ||||||||||| ||||||||||||||| |||||| |||||    
T  47249504 acaacttatgaacatgtcataagtggttttcataagttctttcaaacaatttc 47249452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 10105722 - 10105761
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  10105722 cctgtttggataaacaacttattttgcaccttatctcata 10105761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 19679501 - 19679463
Alignment:
Q  226 atgtcctgtttggataaacaacttattttgcagcttata 264  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  19679501 atgtcctggttggataaacaacttaatttgcagcttata 19679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 21367708 - 21367766
Alignment:
Q  359 ataagttgaagacaacttgtgaa-aatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||| |||||||| ||||||||||| ||||||||||||||||| |||||    
T  21367708 ataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctcccaaac 21367766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 9995853 - 9995886
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  9995853 cctgtttggataaacaacttattttgcaccttat 9995886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 10131539 - 10131572
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  10131539 cctgtttggataaacaacttattttgcatcttat 10131572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 10216870 - 10216903
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  10216870 cctgtttggataaacaacttattttgcaccttat 10216903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 10220389 - 10220422
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||||||||||||| |||||    
T  10220389 cctgtttggataaacaacttattttgcaccttat 10220422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 25182992 - 25182959
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||| ||||||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaac 25182959  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 37273175 - 37273232
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||| ||||||| || | |||||||||||||||| |||||| |||| |||||    
T  37273175 ataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaac 37273232  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 40880953 - 40880920
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||||||||||||||| ||||||||||    
T  40880953 atgtcataagttgttttcataagctctctcaaac 40880920  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 46886890 - 46886850
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  46886890 gtcctgtttggataaacaactta-tttgcagcttatagcata 46886850  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 48387495 - 48387458
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  48387495 tgtttggataaacaacttattttgcatcttataacata 48387458  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 5391920 - 5391968
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagtt 407  Q
    |||||||||| ||| ||| |||| |||||||||| ||||||||||||||    
T  5391920 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 14548729 - 14548693
Alignment:
Q  380 aaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  14548729 aaaatgtcatacgttgttttcataagctctctcaaac 14548693  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 19679333 - 19679301
Alignment:
Q  383 atgtcataagttgttttcataagttctctcaaa 415  Q
    |||||||||||||||||| ||||||||||||||    
T  19679333 atgtcataagttgttttcgtaagttctctcaaa 19679301  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 31762206 - 31762238
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||| |||||||||||||    
T  31762206 tgtttggataaacaacttaatttgcagcttata 31762238  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 37138241 - 37138302
Alignment:
Q  231 ctgtttggataaacaacttattttgcagcttatatcatataagtgtttatgcataagctatttt 294  Q
    |||||||||||||||||||| |||| |||||||| |  ||||||| ||||| ||||| ||||||    
T  37138241 ctgtttggataaacaacttaatttgaagcttatagc--ataagtgcttatgtataagttatttt 37138302  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 37389248 - 37389276
Alignment:
Q  382 aatgtcataagttgttttcataagttctc 410  Q
    |||||||||||||||||||||||||||||    
T  37389248 aatgtcataagttgttttcataagttctc 37389276  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 415
Target Start/End: Original strand, 47132063 - 47132091
Alignment:
Q  387 cataagttgttttcataagttctctcaaa 415  Q
    |||||||||||||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaa 47132091  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 49772813 - 49772781
Alignment:
Q  263 tatcatataagtgtttatgcataagctattttt 295  Q
    ||||||||||||||||||| |||||||||||||    
T  49772813 tatcatataagtgtttatgtataagctattttt 49772781  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 50211805 - 50211833
Alignment:
Q  388 ataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||||||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaac 50211833  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 42336656 - 42336713
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||| ||| ||||||| || | ||||||||||||||||||||||||| ||||||||    
T  42336656 ataagtcgaaaacaacttttggacatgtcataagttgttttcataagttatctcaaac 42336713  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 5741662 - 5741705
Alignment:
Q  373 acttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||    
T  5741662 acttatgaaattgtcataagttgttttcataagttctcccaaac 5741705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 37811893 - 37811948
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaa 414  Q
    |||||||||| |||  || |||| |||||||||| |||||||||||||||||||||    
T  37811893 ataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaa 37811948  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 416
Target Start/End: Original strand, 4481990 - 4482028
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  4481990 tgaacatgtaataagttgttttcataagttctctcaaac 4482028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 18327301 - 18327267
Alignment:
Q  230 cctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||| |||||||||||||||||    
T  18327301 cctgtttggataaacaatttattttgcagcttata 18327267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 29635388 - 29635445
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    ||||| |||| ||||||| | || ||||||||| |||||||||||| |||||||||||    
T  29635388 ataagctgaaaacaacttataaacatgtcataacttgttttcataaattctctcaaac 29635445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 35925585 - 35925622
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  35925585 tgtttggataaacaacttaatttgcagcttatgtcata 35925622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 35925731 - 35925780
Alignment:
Q  359 ataagttgaagacaacttgtgaaaatgtcataagttgttttcataagttc 408  Q
    |||||||||| ||| ||| |||| |||||||||| |||||||||||||||    
T  35925731 ataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 48064189 - 48064226
Alignment:
Q  232 tgtttggataaacaacttattttgcagcttatatcata 269  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  48064189 tgtttggataaacaacttaatttgcagcttatagcata 48064226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 33527323 - 33527291
Alignment:
Q  230 cctgtttggataaacaacttattttgcagctta 262  Q
    |||||||||||||||| ||||||||||||||||    
T  33527323 cctgtttggataaacagcttattttgcagctta 33527291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 34404928 - 34404964
Alignment:
Q  228 gtcctgtttggataaacaacttattttgcagcttata 264  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  34404928 gtcctgtttggataaacaacttaatttgaagcttata 34404964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 37473466 - 37473502
Alignment:
Q  380 aaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||||||||||||||||||||| |||||||| |||||    
T  37473466 aaaatgtcataagttgttttcaaaagttctcccaaac 37473502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 48536812 - 48536780
Alignment:
Q  231 ctgtttggataaacaacttattttgcagcttat 263  Q
    |||||||||||||||||| ||||||||||||||    
T  48536812 ctgtttggataaacaactcattttgcagcttat 48536780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 9647 - 9609
Alignment:
Q  378 tgaaaatgtcataagttgttttcataagttctctcaaac 416  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  9647 tgaacatgtaataagttgttttcataagttctctcaaac 9609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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