View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_13 (Length: 439)
Name: NF2639_low_13
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 4191073 - 4190664
Alignment:
| Q |
18 |
cttccaatctaagggggagcacagtgacccctctaaaaacttgacttaataatgcaataatatagtactgtgtgcccctcaagttttttagtatctagga |
117 |
Q |
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| T |
4191073 |
cttccaatctaagggggagcacagtgacccctctaaaaacttgacttaataatgcaataatatagtactgtgtgcccctcaagttttttagtatctagga |
4190974 |
T |
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| Q |
118 |
tcaaaattttgtgtgcccccctcctgcttttagtaacatatttatcatactaaagtaggtctcataatattttctgatcaagttttatcaataattctgt |
217 |
Q |
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| T |
4190973 |
tcaaaattttgtgtgcccccctcctgcttttagtaacatatttatcatactaaagtaggtctcataatattttctggtcaagttttatcaataattctgt |
4190874 |
T |
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| Q |
218 |
ttccaagatcaattgttttggtagttgctcacttgtgataacaacagttcaattcaatcaactgtacttcacatgttctatctaccagatgagtggtgct |
317 |
Q |
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| T |
4190873 |
ttccaagatcaattgttttggtagttgctcacttgtgataacaacaattcaattcaatcaactgtacttcacatgttctatctaccagatgagtggtgct |
4190774 |
T |
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| Q |
318 |
caaactcatgatatcaaattccacagtaaatgcaagagcataaacttttaacagaaacaataaaattttaatgtcagattgataacctggcaataatgac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
4190773 |
caaactcatgatatcaaattccacagtaaatgcaagagcataaacttttaacagaaacaataaaagtttaatgtcagattgataacctggcaatgatgac |
4190674 |
T |
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| Q |
418 |
gcggtagttc |
427 |
Q |
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| T |
4190673 |
gcggtagttc |
4190664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 4184151 - 4184115
Alignment:
| Q |
391 |
tcagattgataacctggcaataatgacgcggtagttc |
427 |
Q |
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| T |
4184151 |
tcagattgataacctggcaataatgacgcagtagttc |
4184115 |
T |
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