View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_18 (Length: 332)
Name: NF2639_low_18
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 7535210 - 7535018
Alignment:
| Q |
25 |
ttatgtaaaataaaattaaccatcagatatacaaaactgtaaaatcaacttaaataaattagtaccatgattaactccatgtcgcatttaaatttaacta |
124 |
Q |
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| T |
7535210 |
ttatgtaaaataaaattaaccatcagatatacaaaactgtaaaatcaacttaaataaattagtaccatgattaactccatgtcgcatttaaatttaacta |
7535111 |
T |
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| Q |
125 |
acctaatataatacttgagcactaaattatgatatgaaaatggagaaggannnnnnnngtgatgaaaatgacaaggttagtgattatttatag |
217 |
Q |
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| T |
7535110 |
acctaatataatacttgagcactaaattatgatatgaaaatggagaaggattttttttgtgatgaaaatgacaatgttagtgattatttatag |
7535018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 7534955 - 7534917
Alignment:
| Q |
281 |
agtgatactcttgttaccgttactcatcaaagtaattta |
319 |
Q |
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| T |
7534955 |
agtgatactcttgttaccgttactcatcaaagtaattta |
7534917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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