View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_19 (Length: 325)
Name: NF2639_low_19
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 17494041 - 17494355
Alignment:
| Q |
15 |
atcacccaactgaagagaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaatgtcaaggtgaatttttatctaactaatac |
114 |
Q |
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| T |
17494041 |
atcacccaactgaagagaacttcagagaatttgttagttttcttgaggagcacaaagtagacctctctaatgtcaaggtgaattttcatctaactaatac |
17494140 |
T |
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| Q |
115 |
tagtgaacaaaaaagtaaattggatgttgaataaattatctcacttgcnnnnnnnaccctcttttcagagatatgctatagatgatgatgctccttcatt |
214 |
Q |
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| T |
17494141 |
tagt---aaaaaaagtaaattggatgtggaataaattatcttacttgc-ttttttaccct-ttttcagagatatgctatagatgatgatgctccttcatt |
17494235 |
T |
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| Q |
215 |
cattgggaccaatccatttat---------tgaatcacaacaaactatggaccctactcaaacttctcaatcaatgtctaccaataatgcgagcaacaaa |
305 |
Q |
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| T |
17494236 |
cattgggaccaatccatttattgaaactaatgaatcacaacaaactatggaccctactcaaacttctcaatcaatatctaccaataatgtgagcaacaaa |
17494335 |
T |
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| Q |
306 |
ggaatcaatattaataatgc |
325 |
Q |
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| T |
17494336 |
ggaatcaaaattaataatgc |
17494355 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 52367746 - 52367673
Alignment:
| Q |
20 |
ccaactgaagagaacttcagagaatttgttagctttcttgaggagcacaaagtagacctctctaatgtcaaggt |
93 |
Q |
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| T |
52367746 |
ccaacagaagagaacttcaaagaatttataagctttcttggagagcacaatgtagacctcacaaatgtaaaggt |
52367673 |
T |
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