View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_21 (Length: 320)
Name: NF2639_low_21
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 19739054 - 19738740
Alignment:
| Q |
1 |
acgtgagggagtagtgatattgattttaatctaaactgtttaaatgtttttt-gccatgtgtcacacatcagttaagctaactgggaaactggacaaaat |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||| ||||| ||||||||||||| |||||||||||||| |
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| T |
19739054 |
acgtgagggagtagtgatattgattttaatctgaaccgtttaaatgtttttttgccaagtgtcacgcatcaattaagctaactgg-aaactggacaaaat |
19738956 |
T |
|
| Q |
100 |
gctacttggagcatatccggactcgaaaataaaaggatgatcacacataattaaataatttttatataagggcattgatg-nnnnnnnnnnnnntaattt |
198 |
Q |
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|||| ||||||| || || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19738955 |
gctaactggagcagattcgaactcgaaagtaaaaggatggtcacacataattaaataatttttatataagggcattgatgaaaaaaaagaaaaataattt |
19738856 |
T |
|
| Q |
199 |
gtctcttttctactttcttctcatttgagcgaagaagccaaaaacaagtgagactcggctaatttgttctctctttcatatttcttttgcatgccnnnnn |
298 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19738855 |
gtctcttttctactttcttctcatttgagtgatgaagccaaaaa-aagtgagactcggctaatttgttctctctttcatatttcttttgcatgccaaaaa |
19738757 |
T |
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| Q |
299 |
nntgatatgtactctct |
315 |
Q |
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||||||||||||||| |
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| T |
19738756 |
aatgatatgtactctct |
19738740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39937316 - 39937439
Alignment:
| Q |
1 |
acgtgagggagtagtgatattgattttaatctaaactgtttaaatgttttttgccatgtgtcacacatcagttaagctaactgggaaactggacaaaatg |
100 |
Q |
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||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39937316 |
acgtgggggagtaatgatattgattttaatctgaaccgtttaaatgttttttgccatctgtcacacatcagttaagctaactgggaaactggacaaaatg |
39937415 |
T |
|
| Q |
101 |
ctacttggagcatatccggactcg |
124 |
Q |
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||| ||||||| ||||| ||||| |
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| T |
39937416 |
ctaactggagcagatccgaactcg |
39937439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 43078773 - 43078861
Alignment:
| Q |
24 |
ttttaatctaaactgtttaaatgttttttgccatgtgtcacacatcagttaagctaactgggaaactggacaaaatgctacttggagca |
112 |
Q |
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||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
43078773 |
ttttaatctgaaccgtttaaatgttttttgccatgagtcacacatccgttaagctaacctggaaactggacaaaatactaactggagca |
43078861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43078351 - 43078254
Alignment:
| Q |
1 |
acgtgagggagtagtgatattgattttaatctaaactgtttaaatgttttttgccatgtgtcacacatcagttaagctaactgggaaactggacaaaat |
99 |
Q |
| |
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|||||||||||| |||| ||| ||||||||| ||| || ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43078351 |
acgtgagggagtcctgattttgtttttaatctgaaccattcaaatgttttttgcattgtgtcacacatccgttaagctaac-gggaaactggacaaaat |
43078254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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