View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_22 (Length: 313)
Name: NF2639_low_22
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 11491429 - 11491276
Alignment:
| Q |
150 |
aaaactgtggaggtatatctcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataacacg |
249 |
Q |
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| T |
11491429 |
aaaattgtggaggtatatttcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataacacg |
11491330 |
T |
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| Q |
250 |
tatacaaaaagaaacgagacgagtgacttgaatattgttttcccacaggttctg |
303 |
Q |
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| T |
11491329 |
tatacaaaaagaaacgagacgagtgacttgaatattgttttcccacagtttctg |
11491276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11491641 - 11491539
Alignment:
| Q |
1 |
ttgtacttaatgatgatgatgatgttgttatcagtgaatggtcggttgcgttgagatatgctgtattacaggttgactgtttgtttaatgaaatcaacac |
100 |
Q |
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| T |
11491641 |
ttgtacttaatgatgatgatgatgttgttatcaatgaatggtcggttgcgctgagatatgctgtattacaggttgactgtttgtttaatgaaatcaacac |
11491542 |
T |
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| Q |
101 |
tga |
103 |
Q |
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||| |
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| T |
11491541 |
tga |
11491539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 7492570 - 7492470
Alignment:
| Q |
166 |
atctcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataacacgtatacaaaaagaaacg |
265 |
Q |
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| T |
7492570 |
atctcaaaagattttgataatttgaatgtttttgaaaccattcttgaatctattacttcacaaacaatcagtgatgattactcgaatacaaaaagaaacg |
7492471 |
T |
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| Q |
266 |
a |
266 |
Q |
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| T |
7492470 |
a |
7492470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 11497845 - 11497774
Alignment:
| Q |
162 |
gtatatctcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcacaaacaat |
233 |
Q |
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| T |
11497845 |
gtatatctcaactgattttggtattttaaagttttgtgaaaccattcttgaatatattacttcacaaacaat |
11497774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 2919389 - 2919459
Alignment:
| Q |
193 |
gtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataacacgtatacaaaaagaaa |
263 |
Q |
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| T |
2919389 |
gtttttgaaaccattcttgaatctattacatcacaaaaaaccagtaatgttaacttgaatacaaaaagaaa |
2919459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 5988304 - 5988364
Alignment:
| Q |
167 |
tctcaaatgattttgatattttcagggtttatgaaaccattctagaatctattacttcaca |
227 |
Q |
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||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
5988304 |
tctcaaaagattttgatattttcagggttttggaaactattcttgaatctattacttcaca |
5988364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 18387823 - 18387875
Alignment:
| Q |
188 |
tcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaat |
240 |
Q |
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| T |
18387823 |
tcagggttttggaaaccattcttgaatctatcacttcacaaacattcagtaat |
18387875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 17311635 - 17311695
Alignment:
| Q |
186 |
tttcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataac |
246 |
Q |
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||||||||||| ||||||||||| |||||| ||||||| |||||| ||| || ||||||| |
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| T |
17311635 |
tttcagggttttggaaaccattcttgaatctgttacttctcaaacagtcaatagtgataac |
17311695 |
T |
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