View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2639_low_24 (Length: 299)
Name: NF2639_low_24
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 13212882 - 13212605
Alignment:
| Q |
1 |
ccataaaaccctatgatctcgaaaagataatgaggacatatcacaaaatcaaacaagccacctttaggaatcttgtattccttttcaccttttcctctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212882 |
ccataaaaccctatgatctcgaaaagataatgaggacatatcacaaaatcaaacaagccacctttaggaatcttgtattccttttcaccttttcctctta |
13212783 |
T |
|
| Q |
101 |
atttggatagaagataatgatggtagaagttgccggtgacgcctacaagaaacagcgctattccgagatacaatagatcgattgatggttctggaagatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
13212782 |
atttggatagaagataatgatggtagaagtttccggtgacgcctacaagaaacagcgcgattccaggatacaatagatcaattgatggttctggaagatt |
13212683 |
T |
|
| Q |
201 |
caatgtgaggtgttgagcatagatcatagttgcagatgagagaaaataacttagggttatggggattgcagtttcaag |
278 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13212682 |
cgatgtgaggtgttgagcatagatcagagttgcagatgagagaaaataacttagggttatggggattgcagtttcaag |
13212605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 13166036 - 13165929
Alignment:
| Q |
27 |
ataatgaggacatatcacaaaatcaaacaagccacctttaggaatcttgtattccttttcaccttttcctcttaatttggatagaagataatgatggtag |
126 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
13166036 |
ataatgaggacatatcacaatcccaaataagccacctttaggaatcttgtattctttttcaccttttcctctcaattttgatagaagaaaatgatggtag |
13165937 |
T |
|
| Q |
127 |
aagttgcc |
134 |
Q |
| |
|
|||||||| |
|
|
| T |
13165936 |
aagttgcc |
13165929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 13188911 - 13188813
Alignment:
| Q |
27 |
ataatgaggacatatcacaaaatcaaacaagccacctttaggaatcttgtattccttttcaccttttcctcttaatttggatagaagataatgatggta |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
13188911 |
ataatgaggacatatcacaatcccaaataagccacctttaggaatcttgtattctttttcaccttttcctctcaattttgatagaagaaaatgatggta |
13188813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 13188811 - 13188707
Alignment:
| Q |
30 |
atgaggacatatcacaaaatcaaacaagccacctttaggaatcttgtattccttttcaccttttcctcttaatttggatagaagataatgatggtagaag |
129 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| || |
|
|
| T |
13188811 |
atgaggacatatcacaatcccaaataagccacctttaggaatcttgtattctttttcaccttttcctctcaattttgatagaagaaaatgatggtataaa |
13188712 |
T |
|
| Q |
130 |
ttgcc |
134 |
Q |
| |
|
||||| |
|
|
| T |
13188711 |
ttgcc |
13188707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University