View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_27 (Length: 250)
Name: NF2639_low_27
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 35892715 - 35892937
Alignment:
| Q |
19 |
ataatatgattacatatagattatttattatgaaacagtgtcaactcagaggctagaagaggaccagctagcatcaacagcatctatgatcttttcatgt |
118 |
Q |
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| T |
35892715 |
ataatatgattacatatagattatttattatgaaacagtttcaactcagaggctagaagaggaccaactagcatcaacagcatctatgatcttttcatgt |
35892814 |
T |
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| Q |
119 |
aatgtggatccagcacaagcaactataccacgatcaagtcctcgtaagtatgagcctttagagaagtccaaggaacgtcccctaacatctgttactgtgc |
218 |
Q |
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| T |
35892815 |
aatgtggatccagcacaagcaactataccacgatcaagtcctcgtaagtatgagcctttagagaagtccaaggaacgtcccctaacatctgttactgtgc |
35892914 |
T |
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| Q |
219 |
ctcctgcctcttgtatgatgatg |
241 |
Q |
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| T |
35892915 |
ctcctgcctcttgtatgatgatg |
35892937 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 3113429 - 3113358
Alignment:
| Q |
82 |
ccagctagcatcaacagcatctatgatcttttcatgtaatgtggatccagcacaagcaactataccacgatc |
153 |
Q |
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| T |
3113429 |
ccagctagcatcaacagcatcaatgatctttccatgcaatgaggctccagaacaagcaattataccgcgatc |
3113358 |
T |
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