View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_30 (Length: 226)
Name: NF2639_low_30
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_30 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 49254965 - 49254774
Alignment:
| Q |
35 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
134 |
Q |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
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| Q |
135 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttctt |
226 |
Q |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttctt |
49254774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
5 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
100 |
Q |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
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| Q |
101 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
185 |
Q |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 49267227 - 49267036
Alignment:
| Q |
35 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
134 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
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| Q |
135 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttctt |
226 |
Q |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttctt |
49267036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
35 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
134 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
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| Q |
135 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
221 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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