View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2639_low_31 (Length: 223)
Name: NF2639_low_31
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39083224 - 39083436
Alignment:
| Q |
1 |
cactgttccgagaaaacaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttgatttcctaatgagaatgaggaatatcaatatctat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39083224 |
cactgttccgagaaaacaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttggtttcctaatgagaatgaggaatatcaatatctat |
39083323 |
T |
|
| Q |
101 |
tagaaaagtgacgtgcattcccataaagggcgatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttatcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39083324 |
tagaaaagtgacgtgcattcccataaagggcaatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttatcg |
39083423 |
T |
|
| Q |
201 |
tctaaagtctgtg |
213 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
39083424 |
tctaaagtttgtg |
39083436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 31728069 - 31728256
Alignment:
| Q |
11 |
agaaaacaattaacttaaaaaagtttgtttagaaatttttgcattccagaatttgatttcctaatgagaatgaggaatatcaatatctattagaaaagtg |
110 |
Q |
| |
|
|||||||||||||||| || |||||| || ||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
31728069 |
agaaaacaattaacttgaataagtttagtttgaatttttggcaatccagaatttggtttcctaatgagaatgaggaatacaaatatcgattaggaaagta |
31728168 |
T |
|
| Q |
111 |
acgtgcattcccataaagggcgatgtaggatagaagtgtgtattgtaaagtacgtaattacaaatattagagaaaaagtttttgttat |
198 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31728169 |
acatgcattcccataaagggcgatgtaggatagaagtgtgtgttgtaaagtacttaattacgaatattagagaaaaagtttatgttat |
31728256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University