View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_33 (Length: 205)
Name: NF2639_low_33
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 43815472 - 43815297
Alignment:
| Q |
6 |
aaaaaggaccttagaagttaaaggataatcagaagatttccaaagcccacgcttgacatagccatcactattcggaatcctcctgaacacagccaaagca |
105 |
Q |
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| T |
43815472 |
aaaaaggaccttagaagttaaaggataatcagaacatttccaaagctcactcttcacatatccatcactcatcggaatcttcctgaacacagccaaagca |
43815373 |
T |
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| Q |
106 |
agagcaatagcaagatcagcaacatcatcagtcaatacattcggcgtattcgtaacccaaattcctttctctctgc |
181 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| |||| |
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| T |
43815372 |
agagcaatagcaagatcagcaacatcatcagtcaacacatccggcgtattcgtaacacaaatccctttctccctgc |
43815297 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 46467648 - 46467753
Alignment:
| Q |
41 |
atttccaaagcccacgcttgacatagccatcactattcggaatcctcctgaacacagccaaagcaagag------caatagcaagatcagcaacatcatc |
134 |
Q |
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||||| |||| |||| ||||||||| |||||||| || |||||| ||| |||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
46467648 |
atttctaaaggccactcttgacatacccatcactcttaggaatcttccagaacacagccaaagcaagagaaagaacaagagtaagatcagcaacatcatc |
46467747 |
T |
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| Q |
135 |
agtcaa |
140 |
Q |
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|||||| |
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| T |
46467748 |
agtcaa |
46467753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 3521391 - 3521457
Alignment:
| Q |
110 |
caatagcaagatcagcaacatcatcagtcaatacattcggcgtattcgtaacccaaattcctttctc |
176 |
Q |
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||||||| | ||||||||||||||||||||| |||| || |||||||| || ||||| |||||||| |
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| T |
3521391 |
caatagctaaatcagcaacatcatcagtcaacacatcaggtgtattcgtcacacaaatccctttctc |
3521457 |
T |
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