View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2639_low_4 (Length: 610)

Name: NF2639_low_4
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2639_low_4
NF2639_low_4
[»] chr4 (26 HSPs)
chr4 (218-583)||(52137262-52137630)
chr4 (232-427)||(26495116-26495312)
chr4 (226-420)||(56156936-56157131)
chr4 (234-425)||(36244695-36244887)
chr4 (236-425)||(8363319-8363509)
chr4 (318-431)||(26496321-26496435)
chr4 (223-336)||(44499901-44500014)
chr4 (318-420)||(36243520-36243623)
chr4 (329-425)||(56157519-56157616)
chr4 (318-420)||(20625516-20625619)
chr4 (318-420)||(20620140-20620243)
chr4 (242-388)||(36846496-36846641)
chr4 (252-313)||(46795975-46796036)
chr4 (245-382)||(26631158-26631295)
chr4 (252-310)||(29665523-29665581)
chr4 (223-313)||(47667284-47667375)
chr4 (255-388)||(35348831-35348964)
chr4 (329-403)||(52138818-52138891)
chr4 (223-284)||(45536390-45536451)
chr4 (225-313)||(3528296-3528385)
chr4 (223-284)||(23102719-23102780)
chr4 (257-294)||(38554054-38554091)
chr4 (252-294)||(307754-307796)
chr4 (1-31)||(52137834-52137864)
chr4 (242-327)||(669580-669665)
chr4 (253-313)||(38417659-38417719)
[»] scaffold0219 (2 HSPs)
scaffold0219 (225-425)||(6891-7092)
scaffold0219 (345-401)||(8229-8285)
[»] chr1 (19 HSPs)
chr1 (223-420)||(51446760-51446958)
chr1 (223-420)||(14479432-14479630)
chr1 (226-425)||(28051528-28051727)
chr1 (318-429)||(51445582-51445694)
chr1 (318-420)||(14478267-14478370)
chr1 (252-401)||(40533550-40533699)
chr1 (318-425)||(28050317-28050425)
chr1 (223-420)||(12667192-12667390)
chr1 (223-285)||(27557608-27557670)
chr1 (255-313)||(50679773-50679831)
chr1 (255-324)||(14429849-14429918)
chr1 (253-313)||(33941423-33941483)
chr1 (345-388)||(5611760-5611803)
chr1 (255-309)||(5611849-5611902)
chr1 (255-309)||(26287725-26287778)
chr1 (252-313)||(40110601-40110662)
chr1 (345-425)||(48527530-48527611)
chr1 (345-420)||(26287823-26287899)
chr1 (348-388)||(48528939-48528979)
[»] chr8 (16 HSPs)
chr8 (225-400)||(9853589-9853764)
chr8 (318-425)||(9854891-9854999)
chr8 (223-380)||(24191419-24191576)
chr8 (252-401)||(42793720-42793869)
chr8 (223-315)||(39516416-39516509)
chr8 (264-400)||(38697178-38697314)
chr8 (247-316)||(36757164-36757233)
chr8 (252-382)||(43203226-43203356)
chr8 (252-313)||(38091-38151)
chr8 (255-313)||(7770103-7770161)
chr8 (255-313)||(7777780-7777838)
chr8 (253-313)||(16362525-16362585)
chr8 (223-284)||(7844847-7844908)
chr8 (345-386)||(38697904-38697945)
chr8 (349-420)||(28291296-28291368)
chr8 (245-313)||(39323893-39323961)
[»] chr2 (11 HSPs)
chr2 (223-420)||(4919828-4920026)
chr2 (226-426)||(28610017-28610218)
chr2 (225-383)||(45699568-45699726)
chr2 (322-420)||(4921074-4921173)
chr2 (318-426)||(28611264-28611373)
chr2 (311-424)||(8321248-8321362)
chr2 (252-401)||(19397551-19397700)
chr2 (343-399)||(45699523-45699579)
chr2 (345-401)||(19398839-19398895)
chr2 (264-324)||(1147847-1147907)
chr2 (253-294)||(3533576-3533617)
[»] chr3 (15 HSPs)
chr3 (232-420)||(49380880-49381069)
chr3 (223-387)||(14744098-14744262)
chr3 (232-420)||(13621884-13622073)
chr3 (318-432)||(13620909-13621024)
chr3 (329-420)||(49379702-49379794)
chr3 (245-310)||(53809435-53809500)
chr3 (223-313)||(47766870-47766961)
chr3 (252-310)||(48253042-48253100)
chr3 (223-284)||(44601787-44601848)
chr3 (255-294)||(10301767-10301806)
chr3 (255-309)||(10339941-10339995)
chr3 (255-309)||(54750395-54750448)
chr3 (252-309)||(7271540-7271597)
chr3 (255-315)||(7921595-7921655)
chr3 (245-313)||(17345416-17345484)
[»] chr7 (21 HSPs)
chr7 (236-403)||(35296748-35296915)
chr7 (232-420)||(41329396-41329585)
chr7 (223-420)||(32653464-32653662)
chr7 (318-432)||(41328208-41328323)
chr7 (318-425)||(39981313-39981421)
chr7 (252-442)||(43442709-43442900)
chr7 (223-294)||(3330820-3330891)
chr7 (226-313)||(28326312-28326400)
chr7 (226-311)||(41515104-41515190)
chr7 (223-309)||(17288161-17288248)
chr7 (252-315)||(45721715-45721778)
chr7 (223-337)||(666811-666925)
chr7 (262-380)||(44376644-44376762)
chr7 (262-380)||(44385511-44385629)
chr7 (264-324)||(26146665-26146725)
chr7 (225-294)||(29589189-29589258)
chr7 (368-420)||(32653729-32653782)
chr7 (349-425)||(669431-669508)
chr7 (256-313)||(40926472-40926529)
chr7 (345-432)||(26135630-26135718)
chr7 (253-313)||(35483680-35483740)
[»] scaffold0114 (1 HSPs)
scaffold0114 (226-420)||(38541-38736)
[»] chr5 (15 HSPs)
chr5 (226-420)||(11796570-11796764)
chr5 (318-426)||(23333979-23334088)
chr5 (318-420)||(23325913-23326016)
chr5 (225-388)||(10736856-10737020)
chr5 (345-426)||(11797572-11797654)
chr5 (252-427)||(13519467-13519647)
chr5 (242-313)||(8188139-8188210)
chr5 (318-387)||(13520794-13520863)
chr5 (243-311)||(5975864-5975932)
chr5 (252-324)||(9219274-9219346)
chr5 (257-310)||(224544-224597)
chr5 (253-310)||(18695597-18695654)
chr5 (318-420)||(41144530-41144633)
chr5 (255-313)||(21389095-21389153)
chr5 (319-381)||(41143281-41143343)
[»] chr6 (5 HSPs)
chr6 (318-420)||(11722787-11722890)
chr6 (242-292)||(11968403-11968453)
chr6 (318-392)||(21777496-21777570)
chr6 (256-313)||(33807795-33807852)
chr6 (245-313)||(18773760-18773828)
[»] scaffold0098 (1 HSPs)
scaffold0098 (253-294)||(42296-42337)
[»] scaffold0084 (1 HSPs)
scaffold0084 (252-313)||(11812-11873)
[»] scaffold0025 (1 HSPs)
scaffold0025 (253-313)||(54697-54757)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 218 - 583
Target Start/End: Complemental strand, 52137630 - 52137262
Alignment:
Q  218 tagcggctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcga 317  Q
    |||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||  |    
T  52137630 tagctgctgacggttcactataagtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggagatgatgaa 52137531  T
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52137530 tttgaccgacggagtaaaaccaagaggaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatatccaa 52137431  T
Q  417 ttaaacctataatattctattaaaaacatgtatttcttcaacttattaattttataattttttctttccctacttctagtgatttgagttcccttccatt 516  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  52137430 ttaagcctataatattctattaaaaacatgtatttcttcaactcattaattttataattttttctttccttacttctagtgatttgagttcccttccttt 52137331  T
Q  517 tgatttactcacttactacaaatc--ctctttagatgttcaaaccacccaaatctaatttttactttct 583  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  52137330 tgatttactcacttattacaaatcctctctttagatgttcaaaccacccaaatctaatttttactttct 52137262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 232 - 427
Target Start/End: Complemental strand, 26495312 - 26495116
Alignment:
Q  232 tcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagag 331  Q
    ||||||||||||||| ||| |||||||||||||| ||| ||||||||||||| |||| |||||  |||| |||||||| ||||| ||||||||||| |||    
T  26495312 tcactataggtataacagacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 26495213  T
Q  332 caaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctata 427  Q
    |||||||||| | ||||||||||  |||||||||||||| ||| |||||||||||| |||||||||||| | |||||||||| ||||||| ||||||    
T  26495212 caaaaccaaggggaccaaaatgtgagttttacaatttataggagcaaaatgtaaactcataattatttaggggaccaaatattcaattaagcctata 26495116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 56157131 - 56156936
Alignment:
Q  226 gacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactg 325  Q
    ||||| |||||||||||||||| || |||||| ||||||| ||| ||||||||||||| |||| |||||  |||| |||||||| || || |||||| ||    
T  56157131 gacggctcactataggtataatggacatgcaaccaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggagggggtcaatttgattg 56157032  T
Q  326 acagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    || |||||||||||||   ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  56157031 acggagcaaaaccaaggagaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaa 56156936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 234 - 425
Target Start/End: Original strand, 36244695 - 36244887
Alignment:
Q  234 actataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagca 333  Q
    |||||||||||||| || |||||||||||||| ||| ||||||||||| | |||| |||||  |||| |||||||| ||||| ||||||||||| |||||    
T  36244695 actataggtataatggacatgcaatcaaacggctaatatcatatcaaacattttaaacattaaaaaactaacggaggggatcaatttgactgacggagca 36244794  T
Q  334 aaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataatta-tttagagaccaaatatccaattaaaccta 425  Q
    ||| |||| | || |||||||  |||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||||||||||| ||||    
T  36244795 aaatcaaggggacaaaaatgtgagttttacaatttatgggatcaaaatgtaaactcataattattttggggaccaaatatccaattaagccta 36244887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 236 - 425
Target Start/End: Original strand, 8363319 - 8363509
Alignment:
Q  236 tataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaa 335  Q
    |||||||||||| || |||||||||||||   || ||||||||||||| |||| |||||  |||| |||||||| ||||| |||||||| || |||||||    
T  8363319 tataggtataatggacatgcaatcaaacgacgaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactaacggagcaaa 8363418  T
Q  336 accaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaaccta 425  Q
    |||||  | ||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| | |||||||| ||||||||| ||||    
T  8363419 accaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagccta 8363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 318 - 431
Target Start/End: Original strand, 26496321 - 26496435
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| ||||||| | ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  26496321 tttgactgacggagcaaacctaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacacataattagttagaggaccaaatgtccaa 26496420  T
Q  417 ttaaacctataatat 431  Q
    |||| |||| |||||    
T  26496421 ttaagcctaaaatat 26496435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 223 - 336
Target Start/End: Original strand, 44499901 - 44500014
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    |||||||||||||||||| || ||| || ||||||||||||||||||||||| |||||||||| ||||||||   ||| |||||||| ||||| ||||||    
T  44499901 gctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggagtggatcaatttga 44500000  T
Q  323 ctgacagagcaaaa 336  Q
    || || ||||||||    
T  44500001 ctaacggagcaaaa 44500014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 36243623 - 36243520
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaa 416  Q
    ||||||| |||||||||||| ||| | ||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||    
T  36243623 tttgactaacagagcaaaactaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaa 36243524  T
Q  417 ttaa 420  Q
    ||||    
T  36243523 ttaa 36243520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 56157519 - 56157616
Alignment:
Q  329 gagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaaccta 425  Q
    ||||||||||||  | ||||||||||  |||||||||||||||  |||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  56157519 gagcaaaaccaaagggaccaaaatgtgagttttacaatttatgaaaccaaaatgtaaacgcataattatttagaggaccaaatatccaattaagccta 56157616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 20625516 - 20625619
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| || |||||||||||| ||  || |||  ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  20625516 tttgactgacggaccaaaaccaagaggactcaactgtaagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 20625615  T
Q  417 ttaa 420  Q
    ||||    
T  20625616 ttaa 20625619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 20620243 - 20620140
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| || |||||||||||| ||  || |||  ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||  |||||    
T  20620243 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaaggtccaa 20620144  T
Q  417 ttaa 420  Q
    ||||    
T  20620143 ttaa 20620140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 36846496 - 36846641
Alignment:
Q  242 tataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaag 341  Q
    |||||| || ||||||||||| ||||||||||| |||||||||||||||||||  |||| |||||||  ||| | | |||||  || |||||||| ||||    
T  36846496 tataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacatt-aaaaactaacggaagggaccaaattgacgaacggagcaaaa-caag 36846593  T
Q  342 a-gaaccaaaatgttggttttacaatttatgggaccaaaatgtaaaca 388  Q
    | | |||||||||||| |||||| | |||||||||||||||| |||||    
T  36846594 agggaccaaaatgttgattttacgagttatgggaccaaaatgaaaaca 36846641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 46795975 - 46796036
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  46795975 atgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagagga 46796036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 382
Target Start/End: Original strand, 26631158 - 26631295
Alignment:
Q  245 aatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaaga-g 343  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||||||  |  |  ||||||| ||| | | |||||| || |||||||| ||||| |    
T  26631158 aatagacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaaacggaggggaccaaattgactaacggagcaaaa-caagagg 26631256  T
Q  344 aaccaaaatgttggttttacaatttatgggaccaaaatg 382  Q
    ||||||||||||| |||||| | ||||| ||||||||||    
T  26631257 aaccaaaatgttgattttacgagttatgagaccaaaatg 26631295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 29665523 - 29665581
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggaga 310  Q
    ||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  29665523 atgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacggaga 29665581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 47667375 - 47667284
Alignment:
Q  223 gctgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||||||||||| || || ||| || ||||||||||| ||||||||||| || ||||||||||||||||  |||| ||||| ||||||    
T  47667375 gctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagagga 47667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 388
Target Start/End: Complemental strand, 35348964 - 35348831
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaaga-gaaccaaaatg 353  Q
    |||||||| ||||||||||| |||||||| ||||||||||  |||  |||||||| |||   | |||||||||  ||||||| ||||| | || |||| |    
T  35348964 caatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggaggggactaaattgactgacgaagcaaaa-caagagggactaaaacg 35348866  T
Q  354 ttggttttacaatttatgggaccaaaatgtaaaca 388  Q
    ||| |||||||| |||||||||||||||| |||||    
T  35348865 ttgattttacaagttatgggaccaaaatgaaaaca 35348831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 52138818 - 52138891
Alignment:
Q  329 gagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagag 403  Q
    ||||||||||||||| |||||||||  ||| |||||||||||| || |||||| ||||| |||||||||||||||    
T  52138818 gagcaaaaccaagaggaccaaaatgg-ggtcttacaatttatgtgatcaaaatataaacgcataattatttagag 52138891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 45536390 - 45536451
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaa 284  Q
    |||||||||||||||||| || ||| ||||| ||||| |||||||||||||| |||||||||    
T  45536390 gctgacggttcactatagatacaatggatattcaatcgaacggttaaaatcaaatcaaaaaa 45536451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 3528385 - 3528296
Alignment:
Q  225 tgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||||||||| || || ||| || ||||||||||| ||||||||||| || |||||| |||||||||  |||| ||| ||||||||    
T  3528385 tgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaaattagacattaaaaaactaatggagagga 3528296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 23102780 - 23102719
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaa 284  Q
    ||||||||||||||||||  | ||| ||||| ||||| |||||||||||||| |||||||||    
T  23102780 gctgacggttcactatagaaacaatggatattcaatcgaacggttaaaatcaaatcaaaaaa 23102719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 38554091 - 38554054
Alignment:
Q  257 atcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38554091 atcaaatggttaaaatcatatcaaaaaatttagacatt 38554054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 307754 - 307796
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    ||||||||| | ||||||||||||||||||||||||| |||||    
T  307754 atgcaatcatatggttaaaatcatatcaaaaaatttaaacatt 307796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 52137864 - 52137834
Alignment:
Q  1 aaaaagtttccttttgattttgttggagtta 31  Q
    |||||||||||||||||||||||||||||||    
T  52137864 aaaaagtttccttttgattttgttggagtta 52137834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 669580 - 669665
Alignment:
Q  242 tataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgac 327  Q
    |||||| || |||||||||||||||||||||| ||| || | ||| |||||||  || ||||| |||| ||| | |||||||||||    
T  669580 tataatggacatgcaatcaaacggttaaaatcgtataaatatattcagacattaaaacattaatggagtggaccaatttgactgac 669665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 38417719 - 38417659
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||||| ||||||||| ||||||| || |||||  || | ||||||||||||    
T  38417719 tgcaatcaaacggttgaaatcatattaaaaaatctaaacattaaaatactaacggagagga 38417659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 225 - 425
Target Start/End: Complemental strand, 7092 - 6891
Alignment:
Q  225 tgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgac 323  Q
    |||||||||||||| |  |||||| || ||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||| ||||| |||||||    
T  7092 tgacggttcactattaaatataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggag-ggatcaatttgac 6994  T
Q  324 tgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaaac 422  Q
     ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |    
T  6993 cgacggagcaaaaccaaaggaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaattaagc 6894  T
Q  423 cta 425  Q
    |||    
T  6893 cta 6891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 8229 - 8285
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 401  Q
    |||||||||||| |||||| | |||||||||||||||||||||| | ||||| ||||    
T  8229 accaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttag 8285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 223 - 420
Target Start/End: Original strand, 51446760 - 51446958
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    ||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||  |||| |||||||| ||||| ||||||    
T  51446760 gctgacggttcacaataggtataatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttga 51446859  T
Q  323 ctgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    ||||| ||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  51446860 ctgacggagcaaaaccaaggggaccaaaatgtgggttttacaatttatgtgaccaaaatgtaaatgcataattatttagaggaccaaatgtccaattaa 51446958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 223 - 420
Target Start/End: Original strand, 14479432 - 14479630
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    |||||||| |||||||||||||||| || |||||||||||||| ||| || |||||||||| ||||  ||||  |||| |||||||| ||||| ||||||    
T  14479432 gctgacggctcactataggtataatggacatgcaatcaaacggctaatataatatcaaaaattttaatcattaaaaaactaacggaggggatcaatttga 14479531  T
Q  323 ctgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    ||||  ||||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  14479532 ctgatggagcaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 14479630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 425
Target Start/End: Original strand, 28051528 - 28051727
Alignment:
Q  226 gacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactg 325  Q
    ||||| |||||||||||||||| || |||||||||||| | ||| ||||||||||||| |||| |||||  ||||||||||||  | ||| ||||||||     
T  28051528 gacggctcactataggtataatggacatgcaatcaaacagctaatatcatatcaaaaattttaaacattaaaaaattaacggat-gaatcaatttgacta 28051626  T
Q  326 acagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagag-accaaatatccaattaaacct 424  Q
    || |||||||| |||| | ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||| |||    
T  28051627 acggagcaaaatcaaggggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaactcataattatttagggaatcaaatatccaattaagcct 28051726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 318 - 429
Target Start/End: Complemental strand, 51445694 - 51445582
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    ||||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  51445694 tttgactgacagatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 51445595  T
Q  417 ttaaacctataat 429  Q
    |||| ||| ||||    
T  51445594 ttaagcctttaat 51445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 14478370 - 14478267
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| |||||||||| |||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  14478370 tttgactgacggagcaaaacccagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggaccaaatgtccaa 14478271  T
Q  417 ttaa 420  Q
    ||||    
T  14478270 ttaa 14478267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 252 - 401
Target Start/End: Original strand, 40533550 - 40533699
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaaccaaaa 351  Q
    |||||||| || |||||||||||||||||||  ||||||||||  ||||||||||||| ||| |  ||||||| || ||||||| | |   | |||||||    
T  40533550 atgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacctttttgactaacggagcaaagcgagagggaccaaaa 40533649  T
Q  352 tgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 401  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  40533650 tgttggttttacaatttatggaaccaaaatgtaaactgataattatttag 40533699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 28050425 - 28050317
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattt-agagaccaaatatccaa 416  Q
    ||||||| || |||||||| |||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||    
T  28050425 tttgactaacggagcaaaatcaaggggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttaagggaccaaatgtctaa 28050326  T
Q  417 ttaaaccta 425  Q
    |||| ||||    
T  28050325 ttaagccta 28050317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 420
Target Start/End: Original strand, 12667192 - 12667390
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    ||||||||||||||  |  || |||||| ||||||||||| | ||||||||| |||||||||||| ||||||  |||| |||||||| ||| | | ||||    
T  12667192 gctgacggttcactggaaatacaatagacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggaccaagttga 12667291  T
Q  323 ctgacagagcaaaaccaaga-gaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    || || |||||||| ||||| | ||| |||||||  |||||| | || | ||||||||||| ||||  ||||||||||||| ||| ||| ||||||||||    
T  12667292 ctaacggagcaaaa-caagagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggactaaaaatccaattaa 12667390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 27557608 - 27557670
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaat 285  Q
    |||||||||||||||||| |||||| ||||| ||||| ||| |||||||||| ||||||||||    
T  27557608 gctgacggttcactatagatataatggatattcaatcgaacagttaaaatcaaatcaaaaaat 27557670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 50679773 - 50679831
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||| ||| ||||||||||||||||||||||  |||| ||||||||||||    
T  50679773 caatcaaacggttgaaaacatatcaaaaaatttagacattaaaaaactaacggagagga 50679831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 14429918 - 14429849
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    |||||||||||||||||||||||||| ||  |||||||||  |||| |||| |||| |||| ||||||||    
T  14429918 caatcaaacggttaaaatcatatcaagaatattagacattaaaaaaataacagagatgatcaatttgact 14429849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 33941483 - 33941423
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||||||||||||||| |||||  |||||||||  |||| |||| |||||||    
T  33941483 tgcaatcaaacggttaaaatcatattaaaaatgttagacattaaaaaactaacagagagga 33941423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 5611803 - 5611760
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaaca 388  Q
    |||||||||||| |||||||| |||||||||||||||| |||||    
T  5611803 accaaaatgttgattttacaaattatgggaccaaaatgaaaaca 5611760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 5611902 - 5611849
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    |||||||| ||||||||||| ||||| || ||||||||||| |||||||||||||    
T  5611902 caatcaaatggttaaaatcaaatcaagaa-tttagacattgaaaaattaacggag 5611849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 26287725 - 26287778
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    |||||||| ||||||||||| || ||||||||||||||||  |||||||||||||    
T  26287725 caatcaaatggttaaaatcaaat-aaaaaatttagacattaaaaaattaacggag 26287778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 40110601 - 40110662
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||| ||||||||||||||||| || |||| |||||  |||| |||| |||||||    
T  40110601 atgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaacagagagga 40110662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 48527611 - 48527530
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaaccta 425  Q
    |||||||||||  |||||| | ||||||||||||||||||||||   ||||| ||| | ||||||| |||||||||| ||||    
T  48527611 accaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggaccaaaaatccaattaagccta 48527530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 26287823 - 26287899
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    |||||||||||| |||||| | |||||||||||||||| |||||   ||||| ||||| |||||||  |||||||||    
T  26287823 accaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaattagttagaggaccaaaagtccaattaa 26287899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 48528939 - 48528979
Alignment:
Q  348 aaaatgttggttttacaatttatgggaccaaaatgtaaaca 388  Q
    ||||||||| |||||| | ||||||||||||||||||||||    
T  48528939 aaaatgttgattttacgagttatgggaccaaaatgtaaaca 48528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 225 - 400
Target Start/End: Complemental strand, 9853764 - 9853589
Alignment:
Q  225 tgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||  |||| |||||||| ||||| ||||||||    
T  9853764 tgacggttcactataggtataatggatatgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggaggggatcaatttgact 9853665  T
Q  325 gacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta 400  Q
    ||| |||||||||| ||   |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||    
T  9853664 gacggagcaaaacccaggagaccaaaatattagttttacaatttatgggaccaaaatataaacatataattattta 9853589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 318 - 425
Target Start/End: Original strand, 9854891 - 9854999
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| |||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  9854891 tttgactgacggagcaaaatcaagaggaccaaaatgtggattttacaatttatgggaccaaaatgtaaacacataattatttagaggaccaaatgtccaa 9854990  T
Q  417 ttaaaccta 425  Q
    |||| ||||    
T  9854991 ttaagccta 9854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 24191576 - 24191419
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    |||||||||||||||||| || ||| || ||||||||||||||||||||||| |||||||||||||||||||   ||| |||||||| ||||| ||||||    
T  24191576 gctgacggttcactatagatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggagtggatcaatttga 24191477  T
Q  323 ctgacagagcaaaa-ccaagagaaccaaaatgttggttttacaatttatgggaccaaaa 380  Q
     | |||||||||||   ||||| ||||||||| || |||||  | ||||||||||||||    
T  24191476 gtaacagagcaaaagttaagag-accaaaatgatgattttaagagttatgggaccaaaa 24191419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 252 - 401
Target Start/End: Complemental strand, 42793869 - 42793720
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaaga-gaaccaaa 350  Q
    |||||||| || |||||||||||||||||||  ||||||||||  ||||||||| ||| ||| |  ||||||| || |||||||| ||||| | ||||||    
T  42793869 atgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacctttttgactaacggagcaaaa-caagagggaccaaa 42793771  T
Q  351 atgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 401  Q
    |||||  |||||||||||||||||||||||| |||||   |||||||||||    
T  42793770 atgttaattttacaatttatgggaccaaaatataaactggtaattatttag 42793720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 39516416 - 39516509
Alignment:
Q  223 gctgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatc 315  Q
    |||||||||||||||| || || ||| || ||||||||||| ||||||||||| || ||||||||||||||||  |||| ||||||||||||||    
T  39516416 gctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacggagaggatc 39516509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 400
Target Start/End: Complemental strand, 38697314 - 38697178
Alignment:
Q  264 ggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaaccaaaatgttggttttac 363  Q
    ||||||| |||||||||||  ||||||||||  || | |||||||| ||| |  |||||||||  ||||||||  ||  | ||||||||||||||||||     
T  38697314 ggttaaattcatatcaaaagttttagacattaaaatagtaacggaggggacctttttgactgagggagcaaaataaaagggaccaaaatgttggttttat 38697215  T
Q  364 aatttatgggaccaaaatgtaaacacataattattta 400  Q
    |||||||| ||||||||||||||   |||||||||||    
T  38697214 aatttatgagaccaaaatgtaaattgataattattta 38697178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 36757164 - 36757233
Alignment:
Q  247 tagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcg 316  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||  |||| ||| |||||||||||    
T  36757164 tagacatgcaattaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggagaggatcg 36757233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 43203226 - 43203356
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaaga-gaaccaaa 350  Q
    ||||||||||| | ||||||| | |||||||||||||||||||  |||| |||||||| ||| | | ||||||||| ||||||||  |||| | ||  ||    
T  43203226 atgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggaccaaattgactgacggagcaaaa-taagagggacggaa 43203324  T
Q  351 atgttggttttacaatttatgggaccaaaatg 382  Q
    |||||| |||||| | ||||||||||||||||    
T  43203325 atgttgattttacgagttatgggaccaaaatg 43203356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 38151 - 38091
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||| ||| |||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  38151 atgcaattaaatggttaaaatcatatcaaaaaatttagacatt-aaaaactaacggagagga 38091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 7770161 - 7770103
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||| ||||||||||| || ||||||||||||||||  |||| ||||||||||||    
T  7770161 caatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagagga 7770103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 7777838 - 7777780
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||| ||||||||||| || ||||||||||||||||  |||| ||||||||||||    
T  7777838 caatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagagga 7777780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 16362585 - 16362525
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||| ||||||| |||||||||||||||  |||||||||  |||| ||||||||||||    
T  16362585 tgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggagagga 16362525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 7844908 - 7844847
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaa 284  Q
    |||||||||||||||||| || ||| ||||| ||||| || ||||||||||| || ||||||    
T  7844908 gctgacggttcactatagatacaatggatattcaatcgaatggttaaaatcaaataaaaaaa 7844847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 38697945 - 38697904
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaa 386  Q
    |||||||||||| |||||||| |||||| |||||||||||||    
T  38697945 accaaaatgttgattttacaagttatggaaccaaaatgtaaa 38697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 28291368 - 28291296
Alignment:
Q  349 aaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    |||||||| |||||| | |||||||||||||||| ||||  ||||||| ||| | ||||||| ||||||||||    
T  28291368 aaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaa 28291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 39323961 - 39323893
Alignment:
Q  245 aatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||| |||||||| || ||||||||| ||||||||||  |||||  ||| |||| ||||||||||||    
T  39323961 aatagacatgcaatctaatggttaaaattatatcaaaaatattagatcttgaaaaactaacggagagga 39323893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 4920026 - 4919828
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  ||  |||| ||| |||| ||||| ||||||    
T  4920026 gctgatggttcactataggtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggaggggatcaatttga 4919927  T
Q  323 ctgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    ||||| ||||||||||||| | |||||||||| | ||||| |||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||    
T  4919926 ctgacggagcaaaaccaaggggaccaaaatgtggattttataatttatgggaccaaattgtaaatgcataattatttagaggaccaaatgtccaattaa 4919828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 226 - 426
Target Start/End: Complemental strand, 28610218 - 28610017
Alignment:
Q  226 gacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactg 325  Q
    ||||| ||||||||||||||||  | |||||||||||||| ||| ||||||||||||| |||| |||||  |||| |||||||  ||||| |||||||||    
T  28610218 gacggctcactataggtataatgaacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggatgggatcaatttgactg 28610119  T
Q  326 acagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacct 424  Q
    || ||||||||||||| | ||||||||||   |||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||| |||    
T  28610118 acggagcaaaaccaaggggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaactcataattatttaggtgaccaaatgtccaattaagcct 28610019  T
Q  425 at 426  Q
    ||    
T  28610018 at 28610017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 225 - 383
Target Start/End: Complemental strand, 45699726 - 45699568
Alignment:
Q  225 tgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    |||||||||||||||||||| || || |||||||||||| |||||||||||||||||||||||||| |||  |||| ||| |||| || || ||||||||    
T  45699726 tgacggttcactataggtatgatggacatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggagggggtcaatttgact 45699627  T
Q  325 gacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgt 383  Q
    ||| ||||||||||||  | || |||||||  |||||||||||||||| ||||||||||    
T  45699626 gacggagcaaaaccaaagggactaaaatgtgagttttacaatttatggaaccaaaatgt 45699568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 4921074 - 4921173
Alignment:
Q  322 actgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||    
T  4921074 actgacagagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggactaaaatgtaaacgcataattatttagaggaccaaatgtccaattaa 4921173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 28611264 - 28611373
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| |||||||||||| || |||||||| |   |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  28611264 tttgactgacggagcaaaaccaaaaggaccaaaatatgaattttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatatccaa 28611363  T
Q  417 ttaaacctat 426  Q
    |||| |||||    
T  28611364 ttaagcctat 28611373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 8321248 - 8321362
Alignment:
Q  311 ggatcgatttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaa 409  Q
    ||||| ||||||| ||| ||||||||  ||  | || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||    
T  8321248 ggatcaatttgaccgacggagcaaaattaaagggactaaaatgttggttttaaaatttatgggaccaaaatgtaaacgcataattatttagaggatcaaa 8321347  T
Q  410 tatccaattaaacct 424  Q
    | |||||||||||||    
T  8321348 tgtccaattaaacct 8321362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 401
Target Start/End: Complemental strand, 19397700 - 19397551
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaaccaaaa 351  Q
    |||||||| || ||||||||| |||||||||  ||||||||||  |||| |||||||  ||| |  | ||||| || ||||||||| |   | |||||||    
T  19397700 atgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacggaagggacctttatgactaacggagcaaaacgagagggaccaaaa 19397601  T
Q  352 tgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 401  Q
    |||| |||||| ||||||||||||||||||||||||   |||||||||||    
T  19397600 tgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttag 19397551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 45699579 - 45699523
Alignment:
Q  343 gaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattt 399  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  45699579 gaaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacacataattattt 45699523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 19398839 - 19398895
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttag 401  Q
    |||||||||| ||||||||||||||||||||||||||||||||   |||||||||||    
T  19398839 accaaaatgtaggttttacaatttatgggaccaaaatgtaaaccggtaattatttag 19398895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 1147907 - 1147847
Alignment:
Q  264 ggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    |||||||||||||||||||| ||||||||||  |||| |||||||| ||||| ||||||||    
T  1147907 ggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgact 1147847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 3533576 - 3533617
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    ||||||||||||||| |||||||||||||||| ||| |||||    
T  3533576 tgcaatcaaacggttgaaatcatatcaaaaaacttaaacatt 3533617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 232 - 420
Target Start/End: Original strand, 49380880 - 49381069
Alignment:
Q  232 tcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagag 331  Q
    |||||||||||||||| || |||||||||||||| ||| ||||||||||||| |||| |||||  |||| |||||||| ||||| ||||||||||| |||    
T  49380880 tcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggaggggatcaatttgactgacggag 49380979  T
Q  332 caaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    |||||||||| | |||||||| |  |||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  49380980 caaaaccaagggtaccaaaatatgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatatccaattaa 49381069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 223 - 387
Target Start/End: Complemental strand, 14744262 - 14744098
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    ||||| ||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |||| ||||||    
T  14744262 gctgatggttcactatatgtataatggacatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagatgatcaatttga 14744163  T
Q  323 ctgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaac 387  Q
    || || ||||||||||||   |||||||||||  ||||||||||||||| |||||||||||||||    
T  14744162 ctaacggagcaaaaccaatgaaaccaaaatgtgagttttacaatttatgagaccaaaatgtaaac 14744098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 232 - 420
Target Start/End: Original strand, 13621884 - 13622073
Alignment:
Q  232 tcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagag 331  Q
    |||||||||||||||| || |||||||||||||| ||| ||||||||||||| |||| | |||  |||| |||| ||| ||||| |||||||||||  ||    
T  13621884 tcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaaattttaaatattaaaaaactaactgaggggatcaatttgactgacgaag 13621983  T
Q  332 caaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    ||||| |||| | ||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  13621984 caaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 13622073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 13621024 - 13620909
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| ||||||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||    
T  13621024 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttagaggaccaaatgtcaaa 13620925  T
Q  417 ttaaacctataatatt 432  Q
    |||| |||||| ||||    
T  13620924 ttaagcctatattatt 13620909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 329 - 420
Target Start/End: Complemental strand, 49379794 - 49379702
Alignment:
Q  329 gagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaattaa 420  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||    
T  49379794 gagcaaaaccaagagaactaaaatgtgagttttacaatttatgggaccaaaatataaacgcataattatttagaggaccaaatgtccaattaa 49379702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 53809435 - 53809500
Alignment:
Q  245 aatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggaga 310  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||||||||  |||| |||||||||    
T  53809435 aatagacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggaga 53809500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Original strand, 47766870 - 47766961
Alignment:
Q  223 gctgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||||||||||| || || ||| || ||||||||||| ||||||||||| || ||||||||||||||||  |||| ||||| ||||||    
T  47766870 gctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagagga 47766961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 48253100 - 48253042
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggaga 310  Q
    ||||||||||| ||||||||||| |||||||||||||||||||  |||| |||||||||    
T  48253100 atgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggaga 48253042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 44601848 - 44601787
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaa 284  Q
    |||||||||||||||||| || ||| ||||| ||||| |||||||||||||| |||||||||    
T  44601848 gctgacggttcactatagatacaatggatattcaatcgaacggttaaaatcaaatcaaaaaa 44601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 10301767 - 10301806
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  10301767 caatcaaatggttaaaatcaaatcaaaaaatttagacatt 10301806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 10339941 - 10339995
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    |||||||| |||| |||||| |||||||||||||||||||  |||| ||||||||    
T  10339941 caatcaaatggttcaaatcaaatcaaaaaatttagacattaaaaaactaacggag 10339995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 54750395 - 54750448
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    |||||||| ||||||||||| ||||||| |||||||||||  |||||||||||||    
T  54750395 caatcaaatggttaaaatcaaatcaaaa-atttagacattaaaaaattaacggag 54750448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 7271540 - 7271597
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    ||||||||||| ||||||||| | |||||||| ||||||||||  |||| ||||||||    
T  7271540 atgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggag 7271597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 7921595 - 7921655
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatc 315  Q
    ||||| || |||| |||||||||||||||  |||||||||  |||| ||||||||||||||    
T  7921595 caatcgaatggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggatc 7921655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 17345484 - 17345416
Alignment:
Q  245 aatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||| |||||||| || |||| ||||||||| |||||  |||||||||  |||| ||||||||||||    
T  17345484 aatagacatgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagagga 17345416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 35296748 - 35296915
Alignment:
Q  236 tataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaa 335  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||||| || |||||||    
T  35296748 tatatgtataatggacatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggagatgatcaatttgactaacggagcaaa 35296847  T
Q  336 accaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaac-acataattatttagag 403  Q
    |||||| | ||||||||||  |||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  35296848 accaagggtaccaaaatgtgagttttacaatttataggaccaaaatgtaaactaca-aattatttagag 35296915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 232 - 420
Target Start/End: Original strand, 41329396 - 41329585
Alignment:
Q  232 tcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagag 331  Q
    |||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| |||||  |||  |||||||| ||||| ||||||||||| |||    
T  41329396 tcactataggtataatggacatgcaatcaaacggttaatatcacatcaaaaaatttaaacattaaaaatctaacggaggggatcaatttgactgacggag 41329495  T
Q  332 caaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
     |||| |||| | ||||||||||  |||||||||||||| |||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  41329496 taaaatcaaggggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 41329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 32653662 - 32653464
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    |||||| ||||||| |||||||||| || ||||||||||||||||||||| |||||||||| ||||| ||||  |||| |||||||  ||| |  | |||    
T  32653662 gctgacagttcactgtaggtataatggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacggatgggaccattctga 32653563  T
Q  323 ctgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattt-agagaccaaatatccaattaa 420  Q
    | ||| ||||||||||||| | ||| ||||||  ||||||||||||||| ||||||||||||||| ||||||||||| || ||| ||||||||||||||    
T  32653562 ccgacggagcaaaaccaaggggaccgaaatgtgagttttacaatttatgagaccaaaatgtaaacgcataattatttaagggactaaatatccaattaa 32653464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 318 - 432
Target Start/End: Complemental strand, 41328323 - 41328208
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    ||||| |||| || |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  41328323 tttgattgactgatcaaaaccaagaggaccaaaatgtgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaa 41328224  T
Q  417 ttaaacctataatatt 432  Q
    |||| |||||||||||    
T  41328223 ttaagcctataatatt 41328208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 39981421 - 39981313
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    ||||||||||  ||||||||||| || ||||||||||   |||||||||||||||||||||||||||||| || ||||||||||| || ||||| |||||    
T  39981421 tttgactgacgaagcaaaaccaaaaggaccaaaatgtgaattttacaatttatgggaccaaaatgtaaacgcacaattatttagaggatcaaatgtccaa 39981322  T
Q  417 ttaaaccta 425  Q
    |||| ||||    
T  39981321 ttaagccta 39981313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 252 - 442
Target Start/End: Original strand, 43442709 - 43442900
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaaga-gaaccaaa 350  Q
    |||||||||||  |||||||||| |||||||||||||||||||  || | |||||||| ||| | | |||||| || |||||||| ||||| | ||||||    
T  43442709 atgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggaccaaattgactaacggagcaaaa-caagagggaccaaa 43442807  T
Q  351 atgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctataatattctattaaaaa 442  Q
    |||||| |||||| | |||||||||||| ||| |||||   ||||| ||| | |||||||  | |||||||||||| | |||||||| |||||    
T  43442808 atgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggaccaaaagttcaattaaacctaaattattctataaaaaa 43442900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 3330891 - 3330820
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    |||||||||||||||||| || |||  | ||||||||||||||||||||||| |||||||||||||||||||    
T  3330891 gctgacggttcactatagatacaatgaacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacatt 3330820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 28326312 - 28326400
Alignment:
Q  226 gacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||| |  |||||| || ||||||||||| |||||||||||||| ||||||||||||||||  |||| ||||||||||||    
T  28326312 gacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggagagga 28326400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 41515190 - 41515104
Alignment:
Q  226 gacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagag 311  Q
    ||||||||||||| |  |||||| || ||||||||||| |||||||||||||| ||||| ||||||||||  |||||||||||||||    
T  41515190 gacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacggagag 41515104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 17288161 - 17288248
Alignment:
Q  223 gctgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggag 309  Q
    |||||||||||||||| |  || ||| || |||||||||||  ||||||||||||||||||||||||||||||  |||| ||||||||    
T  17288161 gctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 17288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 45721715 - 45721778
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatc 315  Q
    ||||||||||| ||||||||||| || ||||||||||||||||  |||| ||||||||||||||    
T  45721715 atgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggatc 45721778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 666925 - 666811
Alignment:
Q  223 gctgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttga 322  Q
    ||||||||||||||  |  ||||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||  || | |||||||| ||| | | ||||    
T  666925 gctgacggttcactggaaatataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggaccaaattga 666826  T
Q  323 ctgacagagcaaaac 337  Q
    || || |||||||||    
T  666825 ctaacggagcaaaac 666811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 44376644 - 44376762
Alignment:
Q  262 acggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaaccaaaatgttggtttt 361  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||| ||||  |||||||| |  ||||||||   |  | ||||||||| || ||||    
T  44376644 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgatttt 44376743  T
Q  362 acaatttatgggaccaaaa 380  Q
    | || ||||||||||||||    
T  44376744 aaaagttatgggaccaaaa 44376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 44385511 - 44385629
Alignment:
Q  262 acggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaaccaaaatgttggtttt 361  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||| ||||  |||||||| |  ||||||||   |  | ||||||||| || ||||    
T  44385511 acggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggagtggattaatttgactaatggagcaaaagttaagggaccaaaatgatgatttt 44385610  T
Q  362 acaatttatgggaccaaaa 380  Q
    | || ||||||||||||||    
T  44385611 aaaagttatgggaccaaaa 44385629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 26146665 - 26146725
Alignment:
Q  264 ggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    |||||||||||||||||||| ||||||||||  |||| |||||||| ||||| ||||||||    
T  26146665 ggttaaaatcatatcaaaaagtttagacattaaaaaaataacggaggggatcaatttgact 26146725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 29589189 - 29589258
Alignment:
Q  225 tgacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    ||||| |||||||||  |||||| |||||| ||||||| ||||||||||| |||||||| |||| |||||    
T  29589189 tgacgattcactataaatataatggatatgaaatcaaatggttaaaatcaaatcaaaaattttaaacatt 29589258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 32653729 - 32653782
Alignment:
Q  368 tatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| |||||||||    
T  32653729 tatgggaccaaaatgtaaatacataattatttaggggaccaaatgtccaattaa 32653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 669431 - 669508
Alignment:
Q  349 aaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaaccta 425  Q
    |||||||| |||||| | |||||||||||||||| ||||  ||||||| ||| | ||||||| |||||||||| ||||    
T  669431 aaatgttgattttacgaattatgggaccaaaatgaaaactgataattacttaggggaccaaaaatccaattaagccta 669508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 40926472 - 40926529
Alignment:
Q  256 aatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||| |||||||| |||||  |||||||||  ||| |||||||||||||    
T  40926472 aatcaaacggttataatcatattaaaaatattagacattaaaaagttaacggagagga 40926529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 432
Target Start/End: Complemental strand, 26135718 - 26135630
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctataatatt 432  Q
    ||||||| |||| ||||| || |||||||||||||||| |||||   ||||| ||| | |||||||  ||||||||| |||||||||||    
T  26135718 accaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaattagttaggggaccaaaagtccaattaagcctataatatt 26135630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 35483740 - 35483680
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||||| |||||| ||||||||  |||||||||  || | ||||||||||||    
T  35483740 tgcaatcaaacggttgaaatcaaatcaaaaatattagacatttaaatactaacggagagga 35483680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 38736 - 38541
Alignment:
Q  226 gacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactg 325  Q
    ||||| |||||||||||||||| || |||||||||||||| ||| ||||||| ||||| ||||  ||||  |||| |||||||| ||||| |||||||||    
T  38736 gacggctcactataggtataatggacatgcaatcaaacggctaatatcatataaaaaattttaatcattaaaaaactaacggaggggatcaatttgactg 38637  T
Q  326 acagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    || ||| ||||||||| | ||||||||||  |||||||||||||||||||||||||| |||| |||||||||||| | |||||||| |||||||||    
T  38636 acggaggaaaaccaaggggaccaaaatgtgagttttacaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaa 38541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 11796764 - 11796570
Alignment:
Q  226 gacggttcactataggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgactg 325  Q
    ||||| |||||||||||||||| || |||||||||||||| ||| ||||||||||||  |||| |||||  |||| || ||||  ||||| |||||||||    
T  11796764 gacggctcactataggtataatggacatgcaatcaaacggctaatatcatatcaaaagttttaaacattaaaaaactagcggatgggatcaatttgactg 11796665  T
Q  326 acagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaa 420  Q
    |  ||||||||||||| | |||||||| |  ||||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||    
T  11796664 agggagcaaaaccaag-ggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaa 11796570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 426
Target Start/End: Original strand, 23333979 - 23334088
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| || |||||||||||| ||  || |||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  23333979 tttgactgacggaccaaaaccaagaggactcaactgttagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23334078  T
Q  417 ttaaacctat 426  Q
    |||| |||||    
T  23334079 ttaagcctat 23334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 23326016 - 23325913
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| || |||||||||||| ||  || |||  ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  23326016 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaa 23325917  T
Q  417 ttaa 420  Q
    ||||    
T  23325916 ttaa 23325913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 388
Target Start/End: Original strand, 10736856 - 10737020
Alignment:
Q  225 tgacggttcactat-aggtataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgac 323  Q
    |||||||||||||| || || ||| || || |||||||| ||||||||||| |||||||| ||||||||||  ||| ||||||||| ||| | | ||||     
T  10736856 tgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggaccaaattgat 10736955  T
Q  324 tgacagagcaaaaccaaga-gaaccaaaatgttggttttacaatttatgggaccaaaatgtaaaca 388  Q
    | || |||||||| ||||| | |||||||||||| |||||| | |||||||||||||||| |||||    
T  10736956 taacggagcaaaa-caagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaaca 10737020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 11797572 - 11797654
Alignment:
Q  345 accaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaattaaacctat 426  Q
    |||||||||||| |||||| | ||||| ||||||||||||||| |||||||||||| | |||||||| ||||||||| |||||    
T  11797572 accaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcctat 11797654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 252 - 427
Target Start/End: Complemental strand, 13519647 - 13519467
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacatt-----gcaaaattaacggagaggatcgatttgactgacagagcaaaaccaagagaac 346  Q
    ||||||||||| |||||||||||||||||||  ||||||||||      | ||| |||||||  ||||| |||||||  || ||||||||| |  || ||    
T  13519647 atgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaaactaacggaagggatcaatttgacaaacggagcaaaacaagaaggac 13519548  T
Q  347 caaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttagagaccaaatatccaattaaacctata 427  Q
    |||||||||| |||| | | ||||||||| ||||||||||||   ||||| |||| || ||||  ||||||||| ||||||    
T  13519547 caaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaattagttagggaacaaaagtccaattaagcctata 13519467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 8188139 - 8188210
Alignment:
Q  242 tataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||| || ||||||||||| |||||||||||||||| ||| ||||||||||  |||| ||||||||||||    
T  8188139 tataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggagagga 8188210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 13520794 - 13520863
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaac 387  Q
    ||||||| || ||||||||||||||| |||||||||| ||||||| ||||||||| || ||| |||||||    
T  13520794 tttgactaacggagcaaaaccaagaggaccaaaatgtgggttttataatttatggaactaaagtgtaaac 13520863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 5975932 - 5975864
Alignment:
Q  243 ataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagag 311  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||||||||||  |||| |||| |||||    
T  5975932 ataatggacatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaacagagag 5975864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 9219346 - 9219274
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagaggatcgatttgact 324  Q
    ||||||||||||||||||||||| || ||||| ||||||||||  |||| |||||||| ||||| | ||||||    
T  9219346 atgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggaggggatcaaattgact 9219274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 224544 - 224597
Alignment:
Q  257 atcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggaga 310  Q
    |||||| ||||||| |||||||||||||||||||||||  |||| |||||||||    
T  224544 atcaaatggttaaagtcatatcaaaaaatttagacattaaaaaactaacggaga 224597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 18695597 - 18695654
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggaga 310  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||  |||| |||||||||    
T  18695597 tgcaatcaaacggttgaaaacatatcaaaaattttagacattaaaaaactaacggaga 18695654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 41144530 - 41144633
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattattta-gagaccaaatatccaa 416  Q
    ||||||| || |||||||| |||  | ||||||| |||| ||||| ||||||||||||||||||| |||||   ||||| ||| | ||||||| ||||||    
T  41144530 tttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaattaattaggggaccaaaaatccaa 41144629  T
Q  417 ttaa 420  Q
    ||||    
T  41144630 ttaa 41144633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 21389095 - 21389153
Alignment:
Q  255 caatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||  |||| ||||||||||||    
T  21389095 caatcaaacggttgaaaacatataaaaaattttagacattaaaaaactaacggagagga 21389153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 41143343 - 41143281
Alignment:
Q  319 ttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaat 381  Q
    |||||||||||||||||| |||  | |||||||||||| ||||| || ||||| |||||||||    
T  41143343 ttgactgacagagcaaaaacaaagggaccaaaatgttgattttagaacttatgagaccaaaat 41143281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 11722890 - 11722787
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacataattatttaga-gaccaaatatccaa 416  Q
    |||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||    
T  11722890 tttgactgacggagcaaaaccaagaggaccaaaatgtgagttttacaatttatgggatcaaaatgtaaacacataattatttagaggatcaaatgtccaa 11722791  T
Q  417 ttaa 420  Q
    ||||    
T  11722790 ttaa 11722787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 11968403 - 11968453
Alignment:
Q  242 tataatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagaca 292  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  11968403 tataatagacatgcaatcaaatggttaaaatcaaatcaaaaattttagaca 11968453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 21777496 - 21777570
Alignment:
Q  318 tttgactgacagagcaaaaccaagagaaccaaaatgttggttttacaatttatgggaccaaaatgtaaacacata 392  Q
    |||||||||| || |||||||||||| ||  || |||  ||||||||| ||||||||||||||||||||| ||||    
T  21777496 tttgactgacggaccaaaaccaagaggactcaactgtgagttttacaacttatgggaccaaaatgtaaactcata 21777570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 33807852 - 33807795
Alignment:
Q  256 aatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    ||||||||||||| |||||||| |||||  | |||||||  |||||||||||||||||    
T  33807852 aatcaaacggttataatcatatgaaaaatatcagacattaaaaaattaacggagagga 33807795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 18773828 - 18773760
Alignment:
Q  245 aatagatatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||| |||||||| || ||||||||||||||||||||  | |||||||  |||| |||| |||||||    
T  18773828 aatagacatgcaatcgaatggttaaaatcatatcaaaaacatcagacattaaaaaactaacagagagga 18773760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 42296 - 42337
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacatt 294  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  42296 tgcaatcaaacggttgaaatcatatcaaaaaatataaacatt 42337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 11873 - 11812
Alignment:
Q  252 atgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||| || ||||||||||| ||||||||  |||||||||  |||| ||||||||||||    
T  11873 atgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggagagga 11812  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 54757 - 54697
Alignment:
Q  253 tgcaatcaaacggttaaaatcatatcaaaaaatttagacattgcaaaattaacggagagga 313  Q
    |||||||||||||||| |||||||| |||||  ||||||||   |||| ||||||||||||    
T  54757 tgcaatcaaacggttataatcatattaaaaatattagacatcaaaaaactaacggagagga 54697  T

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