View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2639_low_5 (Length: 574)
Name: NF2639_low_5
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_5 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 35891828 - 35892387
Alignment:
| Q |
19 |
acacagaggtagtaactgttagcaagatggtgaacaaaataaggatgcttatctgtttcatttttgctttctttctttgttgtgtacaaacatgaaatgg |
118 |
Q |
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| T |
35891828 |
acacagaggtagtaactgttagcaagatggtgaacaaaataaggatgcttatctgtttcatttttgctttctttctttgttgtgtacaaacatgaaatgg |
35891927 |
T |
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| Q |
119 |
tagaagagagtttatgtgtttggttaatggaatatttaaggtatggagatagatggtggggggtttagtggagtgaaaaaaggtagcatgtggagtacag |
218 |
Q |
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| T |
35891928 |
tagaagagagtttatgtgtttggttaatggaatatttaaggtatggagatagatagtggggggtttagtggagtgaaaaaaggtagcatgtggagtacag |
35892027 |
T |
|
| Q |
219 |
atggtgaatttatgaccctattgttggttggctgcaattattgtagtatgctgacttaattcattacaaccacgtataaagggaaggagtgttatactaa |
318 |
Q |
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| T |
35892028 |
atggtgaatttatgaccctattgttggttggctgcaattattgtagtatgctgacttaattcattacaaccacgtataaagggaaggagtgttatactaa |
35892127 |
T |
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| Q |
319 |
aactagttagttagttcaatttccatttcacttgaatgagtgattatttatggatgaaatgtaaataggttgttgattaaggataattatgttgacatat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
35892128 |
aactagttagttagttcaatttccatttcacttgaatgagtgattatttatggatgacatgtaaataggtgtttgattaaggataattatgttgacatat |
35892227 |
T |
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| Q |
419 |
ttcaattgcattctcatgg----atttgggtccaaagcattgtaccgcatgataggtaggtactcaaaataaataagcagtgagctgtaatgaagaaacc |
514 |
Q |
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| T |
35892228 |
ttcaattgcattctcatggatttatttgggtccaaaccattgtaccgcatgataggtaggtactcaaaataaataagcagtgagctgtaatgaagaaacc |
35892327 |
T |
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| Q |
515 |
aaaatgtgataaaatgagacggatatttctaacacttcatatataagtatttgaaacagc |
574 |
Q |
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| T |
35892328 |
aaaatgtgataaaatgagacagatatttctaacacttcatatataagtatttgaaacagc |
35892387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 142585 - 142541
Alignment:
| Q |
255 |
attattgtagtatgctgacttaattcattacaaccacgtataaag |
299 |
Q |
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| T |
142585 |
attattgtagtatgttgacttaattctttacaaccacgtataaag |
142541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 24500418 - 24500462
Alignment:
| Q |
255 |
attattgtagtatgctgacttaattcattacaaccacgtataaag |
299 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
24500418 |
attattgtagtatgttgacttaattctttacaaccacgtataaag |
24500462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 10800563 - 10800607
Alignment:
| Q |
255 |
attattgtagtatgctgacttaattcattacaaccacgtataaag |
299 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
10800563 |
attattgtagtatgttgacttaattctttacaaccacgtataaag |
10800607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 27305285 - 27305329
Alignment:
| Q |
255 |
attattgtagtatgctgacttaattcattacaaccacgtataaag |
299 |
Q |
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| T |
27305285 |
attattgtagtatgttgacttaattctttacaaccacgtataaag |
27305329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 13569160 - 13569203
Alignment:
| Q |
255 |
attattgtagtatgctgacttaattcattacaaccacgtataaa |
298 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
13569160 |
attattgtagtatgttgacttaattctttacaaccacgtataaa |
13569203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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