View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2639_low_9 (Length: 459)
Name: NF2639_low_9
Description: NF2639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2639_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 45455501 - 45455339
Alignment:
| Q |
5 |
ttctgacttggcctattttatacctaactctaatgattatcataaattactatggtgaacatggactaatgatttagaatgcattaagtttatgtatgtt |
104 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45455501 |
ttctgacttggcctcttttatacgtaactctaatgattatcataaattactgtggtgaacatggactaatgatttagaatgcattaagtttatgtatgct |
45455402 |
T |
|
| Q |
105 |
tattctgtaatgcg-gnnnnnnnnnctgaatgctagcttattttttaatcattcagaatgcat |
166 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
45455401 |
tattccgtaatgcgagaaaagaaaactgaatgctagcttattttctaataattcagaatgcat |
45455339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 211 - 390
Target Start/End: Complemental strand, 2040939 - 2040760
Alignment:
| Q |
211 |
tttcctcattttcataacaagaatatttgcttaggtacatttgtgacaattcgtcattcaaagctttgttttcaaacggagcatctctgatctatacaag |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| | | ||||| |
|
|
| T |
2040939 |
tttcctcatttttataacaagaatatttgcttagctacatttgtgacaattcctcattcaaagcttagttttcaaacggagcatctgcactttgcacaag |
2040840 |
T |
|
| Q |
311 |
tgattagcagagtaatactataaacaaggtctcatttttatctacttacattgtcgatgtgaagttgtcttagtacatgg |
390 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| | || |||||||| || ||| ||||||||||||||| ||||| |
|
|
| T |
2040839 |
tgagtagcagagtaataccgtaaacaaggtctcatttatttccacttacatggttgatctgaagttgtcttagtccatgg |
2040760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 211 - 390
Target Start/End: Complemental strand, 11647491 - 11647311
Alignment:
| Q |
211 |
tttcctcattttcataacaagaatatttgcttaggtacatttgtgacaattcgtcattcaaagctttgttttcaaacggagcatctctgatctatacaag |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || | || || |
|
|
| T |
11647491 |
tttcctcatttttataacaagaatatttgcttaggtgcatttgtgacaattccgcattcaaagcttagttttcaaacggagcatctgcaatttgcacgag |
11647392 |
T |
|
| Q |
311 |
tgattagcagagtaatactataaacaaggtctca-tttttatctacttacattgtcgatgtgaagttgtcttagtacatgg |
390 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| ||||| || |||||||| || ||| ||||||||||||||| ||||| |
|
|
| T |
11647391 |
tgagtagcagagtaataccgtaaacaaggtctcattttttttccacttacatggttgatctgaagttgtcttagtccatgg |
11647311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 47963084 - 47963026
Alignment:
| Q |
34 |
ctaatgattatcataaattactatggtgaacatggactaatgatttagaatgcattaag |
92 |
Q |
| |
|
|||| |||||| | |||||||| ||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
47963084 |
ctaacgattataaaaaattactctggcaaacatggactaatgatttagattgcattaag |
47963026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University