View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2640-Insertion-1 (Length: 949)
Name: NF2640-Insertion-1
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-1 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 743; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 14 - 949
Target Start/End: Complemental strand, 22586006 - 22585072
Alignment:
| Q |
14 |
tggtacctattttttctaatttcaaaatgaattcaacgaagatgaagtatggaatagttttacatgannnnnnnnatagaaagtttatattttttaattg |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
22586006 |
tggtacctattttttctaattccaaaatgaattcaacgaagatgaagtatggaatagttttacatgattttttt-atagaaagtttatattttttcattg |
22585908 |
T |
|
| Q |
114 |
ttgatcaaagtagagatgcaatatggaatgttgctataaatttgaagattagcacgcttccttagctaaattatggacaacaccactgacttgtctcata |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22585907 |
ttgatcaaagtagagatacaatatggaatgttagtatgaatttggagactagcacgcttccttagctaaattatggacaacaccactgacctgtctcata |
22585808 |
T |
|
| Q |
214 |
atgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctttaattattgccataaaatcaaagacaccttcccccatatctacgt |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22585807 |
atgaatttcacataagagcttgctaaatcggtaatcaacaaatatttacaatccttaattattgccataaaaccaaagacaccttcccccatatctacgt |
22585708 |
T |
|
| Q |
314 |
caagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttcttctgcatctggaacacaagctccaaattcaactttattaaggaaaagtggaaaa |
413 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22585707 |
caagtaaaggggtagcccaaactgttcgagctataacaaaatttcttctgcatctggaacacaagctccaaattcaactttattaaggaaaagtggaaaa |
22585608 |
T |
|
| Q |
414 |
ggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgcttcgattcctcacttct |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22585607 |
ggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgcttcgattcctcacttct |
22585508 |
T |
|
| Q |
514 |
tgtgcattcttccaactactcaaaaattctagaacggtcatcaatttgttgggacgtttctgtgacgtcattccacactttgttatttctaaatttccat |
613 |
Q |
| |
|
| ||||||||||||||||||||||| || |||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||| |
|
|
| T |
22585507 |
tctgcattcttccaactactcaaaagttttagagcggtcatcaatttgttggaacgtttatgtgacatcattccacactttgttatttctaagttttcat |
22585408 |
T |
|
| Q |
614 |
aaactccataaagtgactgcaagttgttgttgttgagagacatcaaggtactgaagtagagcaaaaatcatatcagagcaagaagatgcaggtagcccac |
713 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
22585407 |
aaacttcataaagtgaccgcaagttgttgttgttgagggacatcaaggtgctgaagtatagcaaaaatcatatcagagcaaggagatgtaggtagcccac |
22585308 |
T |
|
| Q |
714 |
acatgttgaattgaattccaaaggccaaccctctgccaacaaacaatactcttgctgcacttgaaaaacaggtgcttagcatcctcgtcgcaaacatcac |
813 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22585307 |
acatgttgaattgaatgccaaaggccaacctgctgccaacaaacaatactcttgctgcacttgaagaacaggtgcttagcatcctcgtcgcaaacatcac |
22585208 |
T |
|
| Q |
814 |
aaatagcacaacttgtaggacaatctactccaacagctttataggaataattatttaataaattggactcaaattgttaatgtatgttggacacatacat |
913 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22585207 |
aaatagcacagcttgtaggacaatctacttcaacagctttataggaaaaattatttaataaattggactcaaattgttaatgtatgttggacacatacat |
22585108 |
T |
|
| Q |
914 |
tctgaaaaatgaatttatttctagtcatcaaatgca |
949 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
22585107 |
tctgaacaatgaatttatttctagtcataaaatgca |
22585072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 168 - 296
Target Start/End: Original strand, 36480839 - 36480967
Alignment:
| Q |
168 |
cgcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatct |
267 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || |||||||| ||||||| |||||| ||||||| |||||||||| |||||||| | | |||||||| |
|
|
| T |
36480839 |
cgcttccctagctaaactatgggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatct |
36480938 |
T |
|
| Q |
268 |
ttaattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||||||||||| ||||||| |
|
|
| T |
36480939 |
tgaattattgccataaaatcagagacacc |
36480967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 6682853 - 6682726
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| ||||||| || |||| |||||| ||||||||||| ||||||| | | ||||||| | |
|
|
| T |
6682853 |
gcttccttagctaaactatgagcaacaccattgacttgtctcctaatgaactttacatcagagttcactaaatcggtactcaacaagtgtctacaatcat |
6682754 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| |||||||||||||||||| ||||||| |
|
|
| T |
6682753 |
tgattattgccataaaatcagagacacc |
6682726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 6682616 - 6682516
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaattt-cttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| | |||| |||||| |||||||| |||| ||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
6682616 |
tcccccatatcgacatcaagtagaggggtagtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaatccaactttat |
6682517 |
T |
|
| Q |
397 |
t |
397 |
Q |
| |
|
| |
|
|
| T |
6682516 |
t |
6682516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 298 - 621
Target Start/End: Original strand, 33305254 - 33305579
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| | |||| |||||| ||||||||| ||| ||||| ||| ||||||||||||| ||||||| | |
|
|
| T |
33305254 |
tcccccatatcgacatcaagtagaggggtagtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaatccaactttgt |
33305353 |
T |
|
| Q |
397 |
taaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgc |
496 |
Q |
| |
|
||||| | |||||||||| ||||||||| ||||||||||| ||||||| |||||||||| || ||||| |||||| || | | | | ||||||| |
|
|
| T |
33305354 |
taagggta-gtggaaaagggtgcgtcaacattacacttgaacctccctggactcggtttttcccaagtgtcaatcacaccatgtgtgtttctgttggtgt |
33305452 |
T |
|
| Q |
497 |
ttcgattcctcacttcttgtgcattcttccaactactcaaaaa--ttctagaacggtcatcaatttgttgggacgtttctgtgacgtcattccacacttt |
594 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| |||||||| | | | || ||| | |||||| | | |||||| ||||||| |||||| ||||| |
|
|
| T |
33305453 |
tccgattcctcacgtcttgagcattcttccaactgctcaaaaaattcccggcgcgttcacctatttgtcgagccgtttccgtgacgttattccaaacttt |
33305552 |
T |
|
| Q |
595 |
gttatttctaaatttccataaactcca |
621 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
33305553 |
gttatttctatgtttccatagactcca |
33305579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 298 - 532
Target Start/End: Complemental strand, 18678353 - 18678119
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
|||||||| || || ||||||||| |||||| |||| | ||| ||||||| ||||||||| ||||||||| ||| ||||||||| ||| ||||| ||| |
|
|
| T |
18678353 |
tcccccatgtcaacatcaagtaaaagggtagcccaagcagttagtgctatcacaaaatttccttctgcatcgcgaatacaagctccgaatccaactctat |
18678254 |
T |
|
| Q |
397 |
taaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgc |
496 |
Q |
| |
|
||||| || ||| |||||||||||||||| ||||||||||| ||||| | ||||||| | | || | || |||||| |||| ||||||||||||| |
|
|
| T |
18678253 |
taagggaa-gtgaaaaaggatgcgtcaacattacacttgaacctcccgggactcggtctattccaattttcaatcacaacacgcgaactgcggttggtgc |
18678155 |
T |
|
| Q |
497 |
ttcgattcctcacttcttgtgcattcttccaactac |
532 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18678154 |
tttggttcctcacttcttgtgcattcttccaactac |
18678119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 33305017 - 33305144
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||||| | | ||||||| | |
|
|
| T |
33305017 |
gcttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcat |
33305116 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||| |||||| ||||||| |
|
|
| T |
33305117 |
tgattattgccatgaaatcagagacacc |
33305144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 18678588 - 18678465
Alignment:
| Q |
171 |
ttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatcttta |
270 |
Q |
| |
|
||||||||||||| |||| |||||| | || |||||||| ||||||| |||||| ||||||| ||||||||||| ||||||| | ||||||| ||| |
|
|
| T |
18678588 |
ttccttagctaaactatgagcaacactattggcttgtctcctaatgaaactcacattagagtttactaaatcggtacctaacaaatgtctacaatcatta |
18678489 |
T |
|
| Q |
271 |
attattgccataaaatcaaagaca |
294 |
Q |
| |
|
||||||||||| |||||| ||||| |
|
|
| T |
18678488 |
attattgccatgaaatcagagaca |
18678465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 717 - 823
Target Start/End: Original strand, 33305674 - 33305780
Alignment:
| Q |
717 |
tgttgaattgaattccaaaggccaaccctctgccaacaaacaatactcttgctgcacttgaaaaacaggtgcttagcatcctcgtcgcaaacatcacaaa |
816 |
Q |
| |
|
||||| |||| || |||||| |||||| ||||| || |||| |||||||||||||| ||| ||||| || |||||||| || ||||||| ||| || | |
|
|
| T |
33305674 |
tgttggattgtatgccaaagaccaacctgttgccagcacacaacactcttgctgcactcgaagaacagatgtttagcatcttcatcgcaaatatcgcaga |
33305773 |
T |
|
| Q |
817 |
tagcaca |
823 |
Q |
| |
|
||||||| |
|
|
| T |
33305774 |
tagcaca |
33305780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 5e-37; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 298 - 621
Target Start/End: Complemental strand, 35322189 - 35321864
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| | |||| |||||| ||||||||| ||| ||||| ||| ||||||||||||| ||||||| | |
|
|
| T |
35322189 |
tcccccatatcgacatcaagtagaggggtagtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaatccaactttgt |
35322090 |
T |
|
| Q |
397 |
taaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgc |
496 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||||||||| ||||||| |||||||||| || ||||| ||| || || | | | | ||||||| |
|
|
| T |
35322089 |
taagggta-gtggaaaaggatgcgtcaacattacacttgaacctccctggactcggtttttcccaagtgtcaatcgcaccatgtgtgtttctgttggtgt |
35321991 |
T |
|
| Q |
497 |
ttcgattcctcacttcttgtgcattcttccaactactcaaaaa--ttctagaacggtcatcaatttgttgggacgtttctgtgacgtcattccacacttt |
594 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| |||||||| | | | || ||| | |||||| | | |||||| ||||||| |||||| ||||| |
|
|
| T |
35321990 |
tccgattcctcacgtcttgagcattcttccaactgctcaaaaaattcccggcgcgttcacctatttgtcgagccgtttccgtgacgttattccaaacttt |
35321891 |
T |
|
| Q |
595 |
gttatttctaaatttccataaactcca |
621 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
35321890 |
gttatttctatgtttccatagactcca |
35321864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 168 - 296
Target Start/End: Original strand, 33737538 - 33737666
Alignment:
| Q |
168 |
cgcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatct |
267 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || |||||||| ||||||| |||||| ||||||| |||||||||| |||||||| | | |||||||| |
|
|
| T |
33737538 |
cgcttccctagctaaactatgggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatct |
33737637 |
T |
|
| Q |
268 |
ttaattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||||||||||| ||||||| |
|
|
| T |
33737638 |
tgaattattgccataaaatcagagacacc |
33737666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 14585928 - 14585801
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| || |||||||| |||| || ||||||| |||||||||||| ||||| |||||||| | ||||||||| | |
|
|
| T |
14585928 |
gcttccctagctaaactatgggcaacaccattggcttgtctcctaataaaattcacatcagagtttgctaagtcggtcatcaacaagtgtttacaatcat |
14585829 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
||| ||||||||||||||| ||||||| |
|
|
| T |
14585828 |
gaataattgccataaaatcagagacacc |
14585801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 35322426 - 35322299
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||||| | | ||||||| | |
|
|
| T |
35322426 |
gcttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcat |
35322327 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||| |||||| ||||||| |
|
|
| T |
35322326 |
tgattattgccatgaaatcagagacacc |
35322299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 717 - 823
Target Start/End: Complemental strand, 35321769 - 35321663
Alignment:
| Q |
717 |
tgttgaattgaattccaaaggccaaccctctgccaacaaacaatactcttgctgcacttgaaaaacaggtgcttagcatcctcgtcgcaaacatcacaaa |
816 |
Q |
| |
|
||||| |||| || |||||| |||||| ||||| || |||| |||||||||||||| ||| ||||| || |||||||| || ||||||| ||| || | |
|
|
| T |
35321769 |
tgttggattgtatgccaaagaccaacctgttgccagcacacaacactcttgctgcactcgaagaacagatgtttagcatcttcatcgcaaatatcgcaga |
35321670 |
T |
|
| Q |
817 |
tagcaca |
823 |
Q |
| |
|
||||||| |
|
|
| T |
35321669 |
tagcaca |
35321663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 298 - 539
Target Start/End: Complemental strand, 31637439 - 31637198
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| | |||| |||||| ||||||||| ||| ||||| ||| ||||||||||||| ||||||| | |
|
|
| T |
31637439 |
tcccccatatcgacatcaagtagaggggtagtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaatccaactttgt |
31637340 |
T |
|
| Q |
397 |
taaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgc |
496 |
Q |
| |
|
| ||| | |||||||||||||||||||| ||||||||||| ||||||| |||||||||| || ||||| |||||| || | | | | ||||||| |
|
|
| T |
31637339 |
tgagggta-gtggaaaaggatgcgtcaacattacacttgaacctccctggactcggtttttcccaagtgtcaatcacaccatgtgtgtttctgttggtgt |
31637241 |
T |
|
| Q |
497 |
ttcgattcctcacttcttgtgcattcttccaactactcaaaaa |
539 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
31637240 |
tccgattcctcacgtcttgagcattcttccaactgctcaaaaa |
31637198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 298 - 621
Target Start/End: Original strand, 6999765 - 7000090
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaactttat |
396 |
Q |
| |
|
|||||||||| || ||||||| | |||| |||||| | |||| |||||| ||||||||| ||| ||||| ||| ||||||||||||| ||||||| | |
|
|
| T |
6999765 |
tcccccatattgacatcaagtagaagggtcgtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaatccaactttgt |
6999864 |
T |
|
| Q |
397 |
taaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggttggtgc |
496 |
Q |
| |
|
||||| | |||||||||||||||||||| ||||||||||| ||||||| |||||||||| || | ||| |||||| || | | | | ||||||| |
|
|
| T |
6999865 |
taagggta-gtggaaaaggatgcgtcaacattacacttgaacctccctggactcggtttttcccaagagtcaatcacaccatgtgtgtttctgttggtgt |
6999963 |
T |
|
| Q |
497 |
ttcgattcctcacttcttgtgcattcttccaactactc-aaaaattc-tagaacggtcatcaatttgttgggacgtttctgtgacgtcattccacacttt |
594 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||| ||| |||||||| | | || ||| | ||||||| | |||||| ||||||| |||||| ||||| |
|
|
| T |
6999964 |
tctgattcctcacgtcttgagcattcttccaactgctcaaaaaattcatggcgcgttcacctgtttgttgagccgtttccgtgacgttattccaaacttt |
7000063 |
T |
|
| Q |
595 |
gttatttctaaatttccataaactcca |
621 |
Q |
| |
|
|||||||||| |||||||| |||||| |
|
|
| T |
7000064 |
gttatttctatgtttccatagactcca |
7000090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 31637676 - 31637549
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||||| ||||||| | | ||||||| | |
|
|
| T |
31637676 |
gcttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcat |
31637577 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||| |||||| ||||||| |
|
|
| T |
31637576 |
tgattattgccatgaaatcagagacacc |
31637549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 51899470 - 51899597
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || |||||||| |||| || |||||| ||||||| |||| ||||| |||||||| | | ||||||| | |
|
|
| T |
51899470 |
gcttccctagctaaattatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcat |
51899569 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
51899570 |
gaattattgccataaaatcagagacacc |
51899597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 6999526 - 6999653
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| | |||||| ||||||||||| ||||||| ||||||| |||||| |||||| |||| ||||||| | | ||||||| | |
|
|
| T |
6999526 |
gcttccttagctaaactatgagccacaccattgacttgtctcctaatgaacttcacatcagagttcactaaattggtactcaacaagtgtctacaatcat |
6999625 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||| |||||| ||||||| |
|
|
| T |
6999626 |
tgattattgccatgaaatcagagacacc |
6999653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 16932958 - 16933085
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| || |||||||| |||| || |||||| |||||||| ||||||||| |||| ||| | | ||||||| | |
|
|
| T |
16932958 |
gcttccctagctaaactatgggcaacaccattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcagcaagtgtctacaatcat |
16933057 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
16933058 |
ggataattgccataaaatcagagacacc |
16933085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 12723451 - 12723578
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||| || |||| |||| || |||||| ||||||| ||||||||| |||||||| | | ||||||| | |
|
|
| T |
12723451 |
gcttccctagctaaactatgggcaacaccattgatttatctcctaattaaactcacatcagagtttattaaatcggtcatcaacaagtgtctacaatcat |
12723550 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
12723551 |
ggataattgccataaaatcatagacacc |
12723578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 717 - 821
Target Start/End: Original strand, 7000155 - 7000259
Alignment:
| Q |
717 |
tgttgaattgaattccaaaggccaaccctctgccaacaaacaatactcttgctgcacttgaaaaacaggtgcttagcatcctcgtcgcaaacatcacaaa |
816 |
Q |
| |
|
||||| |||| || |||||| |||||| ||||| || |||| |||||||||||||| ||| ||||| || |||||||| |||||||||| ||| || | |
|
|
| T |
7000155 |
tgttggattgtatgccaaagaccaacctgttgccagcacacaacactcttgctgcactcgaagaacagatgtttagcatcttcgtcgcaaatatcgcaga |
7000254 |
T |
|
| Q |
817 |
tagca |
821 |
Q |
| |
|
||||| |
|
|
| T |
7000255 |
tagca |
7000259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 298 - 621
Target Start/End: Original strand, 13997481 - 13997811
Alignment:
| Q |
298 |
tcccccatatctacgtcaagtaaaggggtagtccaaaccgttcgtgctatagcaaaatttc-ttctgcatctggaacacaagctccaaattcaa-----c |
391 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||| | |||| |||||| ||||||||| ||| ||||| ||| |||||||||||||| || | |
|
|
| T |
13997481 |
tcccccatatcgacatcaagtagaggggtagtccaagcagttcttgctatcacaaaatttccttcggcatcacgaatacaagctccaaattaaatctaac |
13997580 |
T |
|
| Q |
392 |
tttattaaggaaaagtggaaaaggatgcgtcaacgttacacttgaatctccctgcactcggttttgtacatgtgtctatcacattgtgcgagctgcggtt |
491 |
Q |
| |
|
||| |||||| | |||||||||||||||||||| ||||||||||| ||||||| |||||||||| || ||||| |||||| || | | | | ||| |
|
|
| T |
13997581 |
tttgttaagggta-gtggaaaaggatgcgtcaacattacacttgaacctccctggactcggtttttcccaagtgtcaatcacaccatgtgtgtttctgtt |
13997679 |
T |
|
| Q |
492 |
ggtgcttcgattcctcacttcttgtgcattcttccaactactcaaaaa--ttctagaacggtcatcaatttgttgggacgtttctgtgacgtcattccac |
589 |
Q |
| |
|
|||| | ||||||||||| ||||| |||||||||||||| |||||||| | || | || ||| | |||||||| | |||||| ||||||| |||||| |
|
|
| T |
13997680 |
ggtgttccgattcctcacgtcttgagcattcttccaactgctcaaaaaattcctggcgcgttcacctatttgttgagccgtttccgtgacgttattccaa |
13997779 |
T |
|
| Q |
590 |
actttgttatttctaaatttccataaactcca |
621 |
Q |
| |
|
||||||||||||||| ||||| || |||||| |
|
|
| T |
13997780 |
actttgttatttctatgtttccgtagactcca |
13997811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 13997244 - 13997371
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||||||| ||||||| || |||| |||||| ||||||||||| ||||||| | | ||||||| | |
|
|
| T |
13997244 |
gcttccttagctaaactatgagcaacaccattgacttgtctcctaatgaacttaacatcagagttcactaaatcggtactcaacaagtgtctacaatcat |
13997343 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| |||||||||||||||||| ||||||| |
|
|
| T |
13997344 |
tgattattgccataaaatcagagacacc |
13997371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 330278 - 330151
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| || |||||||| |||| || |||||| ||||||| |||| ||||| |||||||| | | ||||||| | |
|
|
| T |
330278 |
gcttccctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcat |
330179 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
330178 |
gaattattgccataaaatcagagacacc |
330151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 717 - 823
Target Start/End: Original strand, 13997906 - 13998012
Alignment:
| Q |
717 |
tgttgaattgaattccaaaggccaaccctctgccaacaaacaatactcttgctgcacttgaaaaacaggtgcttagcatcctcgtcgcaaacatcacaaa |
816 |
Q |
| |
|
||||| |||| || |||||| |||||| ||||| || |||| |||||||||||||| ||| ||||| || |||||||| || ||||||| ||| || | |
|
|
| T |
13997906 |
tgttggattgtatgccaaagaccaacctgttgccagcacacaacactcttgctgcactcgaagaacagatgtttagcatcttcatcgcaaatatcgcaga |
13998005 |
T |
|
| Q |
817 |
tagcaca |
823 |
Q |
| |
|
||||||| |
|
|
| T |
13998006 |
tagcaca |
13998012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 175 - 296
Target Start/End: Original strand, 4922 - 5043
Alignment:
| Q |
175 |
ttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctttaatta |
274 |
Q |
| |
|
||||||||| ||||| |||||||| || ||||||| ||||||| |||||| ||||||| |||||||||| |||||||| | | ||||||||| ||||| |
|
|
| T |
4922 |
ttagctaaactatgggcaacaccattggcttgtcttctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaatta |
5021 |
T |
|
| Q |
275 |
ttgccataaaatcaaagacacc |
296 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
5022 |
ttgccataaaatcagagacacc |
5043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 19334 - 19462
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagttt-gctaaatcggtaatcaacaaatatttacaatct |
267 |
Q |
| |
|
|||||||||| |||| ||| |||||||| ||||||||||| ||||||| ||||||| ||||||| ||||||| ||| ||||||| | | ||||||| |
|
|
| T |
19334 |
gcttccttagttaaactataagcaacaccattgacttgtctcctaatgaacttcacatcagagtttcactaaatcagtattcaacaagtgtctacaatca |
19433 |
T |
|
| Q |
268 |
ttaattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |
|
|
| T |
19434 |
tttattattgccatgaaatcaaagacacc |
19462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 169 - 302
Target Start/End: Complemental strand, 39648349 - 39648216
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| ||||| |||||| | || | |||||| | ||||| ||||||| ||||| |||||||| || |||||||| | | ||||||| | |
|
|
| T |
39648349 |
gcttccttagctaaactatgggcaacactattggcctgtctcttgatgaacttcacatctgagttcgctaaatcagtcatcaacaagtgtctacaatcat |
39648250 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacaccttcccc |
302 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| |
|
|
| T |
39648249 |
gaattatggccataaaatcagagacaccatcccc |
39648216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 10894 - 10767
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
||||||||||||||| ||||| |||||| | || |||||||| |||| || |||||| |||||||| ||||||||| |||||||| | | ||||||| | |
|
|
| T |
10894 |
gcttccttagctaaactatgggcaacacgattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcaacaagtgtctacaatcat |
10795 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
|| |||| |||||||||| ||||||| |
|
|
| T |
10794 |
ggataattggcataaaatcagagacacc |
10767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 288
Target Start/End: Complemental strand, 48207597 - 48207478
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| || |||||||| |||| || |||||| ||||||| |||| ||||| ||||| || | | ||||||| | |
|
|
| T |
48207597 |
gcttccctagctaaactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaaaaagtgtctacaatcat |
48207498 |
T |
|
| Q |
269 |
taattattgccataaaatca |
288 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48207497 |
gaattattgccataaaatca |
48207478 |
T |
|
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Target: scaffold0112 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 24024 - 23897
Alignment:
| Q |
169 |
gcttccttagctaaattatggacaacaccactgacttgtctcataatgaatttcacataagagtttgctaaatcggtaatcaacaaatatttacaatctt |
268 |
Q |
| |
|
|||||| || |||||||||| |||||| | |||||| |||| ||||||||| |||| |||||| ||||||||||| ||| ||||| | ||||||| | |
|
|
| T |
24024 |
gcttccataactaaattatgagcaacactattgacttatctcccaatgaattttacattagagttcactaaatcggtattcaccaaatgtctacaatcat |
23925 |
T |
|
| Q |
269 |
taattattgccataaaatcaaagacacc |
296 |
Q |
| |
|
| ||||||||||| ||||| ||||||| |
|
|
| T |
23924 |
tgattattgccatgaaatctgagacacc |
23897 |
T |
|
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