View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-10 (Length: 696)
Name: NF2640-Insertion-10
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 695
Target Start/End: Complemental strand, 14735467 - 14734782
Alignment:
| Q |
8 |
aggacagagcaggacctgtagaattcgtatcttagctcaaaacatcaattccaagtacccaaatgcacgtatcgagtctagaaaycacgtaa---cctta |
104 |
Q |
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| T |
14735467 |
aggacagagcaggacctgtagaattcgtatcttagctcaaaacatcaattccaagtacccaaatgcacgtatcgagtctagaaatcacgtaaacacctta |
14735368 |
T |
|
| Q |
105 |
attcatcattatggcaagaattaacaagttaatcaagcaaaacatagagttgtggagataatcacgtctacacaaaacttagaaaaccacgttgtctcac |
204 |
Q |
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| T |
14735367 |
attcatcattatggcaagaattaacaagttaatcaagcaaaacatagagttgtggagataatcacatctacacaaaacttagaaaaccacgttg-ctcac |
14735269 |
T |
|
| Q |
205 |
accgaactcttttctaaccggctgacattttttgtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccaattttactc |
304 |
Q |
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| T |
14735268 |
accgaactcttttctaaccggctgacattttttgtttatacttaaagtcagtgaactaagaaaatcaaagaccataccagtggtgattccagttttactc |
14735169 |
T |
|
| Q |
305 |
gagtcccatcattttgaacctggtgcttcaagaatttcttgctcatctctcaatacttctcactagaaatggctaagcgcttgactaaccgctacttatc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
14735168 |
gagtcccatcattttgaacctggtgcttcaagaatttcttactcatctctcaatacttctcactagaaatggctaaccgcttgactaacggctacttatc |
14735069 |
T |
|
| Q |
405 |
ctatctcatatatgaaactcctattccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccggtgcgccactttgattcatcatt |
504 |
Q |
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| T |
14735068 |
ctatctcat----gaaactcctattccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccactgcgccactttgattcatcatt |
14734973 |
T |
|
| Q |
505 |
tatatatcattagccataatcaccaatctgtgagactcgtgggtattacactctcattaatacatggttatttaatttccaagttattcttgggagttca |
604 |
Q |
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| T |
14734972 |
tatatatcattagccataatcaccaatccgtgagactcgtgggtattacactctcattaatacatggttatttaatttccaagttattcttgggagttca |
14734873 |
T |
|
| Q |
605 |
catgtcgcgatcagacgagctagcttgcacttttcgctgcctcataaggttaactcatcaaaccaaagtgcgctatactagtaccaattcc |
695 |
Q |
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| T |
14734872 |
cgtgtcgcgatcagaggggctagcttgcacttttcactgcctcataaggttaactcatcaaaccaaagtgcgctatactagtaccgattcc |
14734782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 664
Target Start/End: Complemental strand, 15596422 - 15596084
Alignment:
| Q |
318 |
ttgaacctggtgcttcaagaatttcttgctcatctctcaatacttctcactagaaatggctaagcgcttgactaaccgctacttatcctatctcatatat |
417 |
Q |
| |
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|||||| ||| ||||||| |||||||| ||| ||||| || |||||||||| |||| ||||| |||||||| ||| ||||||||| |||||||| |
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| T |
15596422 |
ttgaacttggcgcttcaaaaatttcttactcgtctcttaacacttctcactggaaacggctaccagcttgactgaccactacttatcgtatctcat---- |
15596327 |
T |
|
| Q |
418 |
gaaactcctattccaaggtccaagaatttgcgtattccttaaacttcttactaatcaatttccggtgcgccactttgattcatcatttatatatcattag |
517 |
Q |
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||||||| |||||||| || |||| |||| |||||| | || | ||| | ||||||||| | || |||||| |||||| ||| | || | | || |
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| T |
15596326 |
gaaactcatattccaaagtacaaggctttgtgtattctattaattccttgccgatcaatttctgttgtgccactctgattcctcagtcatctgt----ag |
15596231 |
T |
|
| Q |
518 |
ccataatcaccaatctgtgagactcgtgggtatt-acactctcattaatacatggttatttaatttccaagttattcttgggagttcacatgtcgcgatc |
616 |
Q |
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||||| |||| |||| |||||||||||| || ||||||||||| ||||| ||||| ||||||||| |||| || ||||||||||||| ||||| | |
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| T |
15596230 |
ccatattcactaatccgtgagactcgtgaaatttcacactctcattgctacattgttatcaaatttccaaattatcct-gggagttcacatgccgcgacc |
15596132 |
T |
|
| Q |
617 |
agacgagctagcttgcacttttcgctgcctcataaggttaactcatca |
664 |
Q |
| |
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||| | |||||||||||||| || |||| ||||||||||| ||||||| |
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| T |
15596131 |
agaggggctagcttgcacttctcactgcttcataaggttagctcatca |
15596084 |
T |
|
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