View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-13 (Length: 648)

Name: NF2640-Insertion-13
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-13
NF2640-Insertion-13
[»] chr3 (3 HSPs)
chr3 (8-634)||(24832739-24833366)
chr3 (201-282)||(49766562-49766643)
chr3 (207-281)||(34575495-34575569)
[»] chr8 (6 HSPs)
chr8 (202-281)||(35485385-35485464)
chr8 (202-281)||(36100760-36100839)
chr8 (208-281)||(10739710-10739783)
chr8 (210-281)||(9819670-9819741)
chr8 (207-281)||(36020483-36020557)
chr8 (211-281)||(6057516-6057586)
[»] chr2 (6 HSPs)
chr2 (207-282)||(5197849-5197924)
chr2 (207-281)||(41514954-41515028)
chr2 (210-281)||(4824236-4824307)
chr2 (210-281)||(38695375-38695446)
chr2 (207-281)||(41702219-41702293)
chr2 (209-281)||(615420-615492)
[»] chr1 (3 HSPs)
chr1 (202-281)||(23775158-23775237)
chr1 (210-281)||(43467536-43467607)
chr1 (213-279)||(43466644-43466710)
[»] chr5 (3 HSPs)
chr5 (207-281)||(42461227-42461301)
chr5 (209-282)||(12694511-12694584)
chr5 (212-281)||(12694216-12694285)
[»] chr4 (2 HSPs)
chr4 (208-281)||(30514361-30514434)
chr4 (210-281)||(38872579-38872650)
[»] scaffold0350 (1 HSPs)
scaffold0350 (211-281)||(16941-17011)
[»] scaffold0016 (1 HSPs)
scaffold0016 (228-284)||(38498-38554)


Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 634
Target Start/End: Complemental strand, 24833366 - 24832739
Alignment:
Q  8 tccacaaattcttccgacacttcatttccatcgtaaaccaatttctgaacataattatggaatgaaaaagggggaaaaaaggtcatgacaaaaatattag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  24833366 tccacaaattcttccgacacttcatttccatcgtaaaccaatttctgaacataattatggaatgaaaaagggggaaaaaagttgatgacaaaaatattag 24833267  T
Q  108 ag-cactcttaaaagttacatttattagaaacaatagaaaatagtagatatgtgatatcttaatatagtatatactccaaaaagcgtgaaatactaacat 206  Q
    || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24833266 aggcactcttaaaagttacatttattcgaaacaatagaaa-tagtagatatgtgatatcttaatatagtatatagtccaaaaagcgtgaaatactaacat 24833168  T
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaatgcatgctttttcataattctaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24833167 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaatacatactttttcataattctaa 24833068  T
Q  307 ttttc-ctccattttctctcacttttaatttaacttattatgaaactggaaatgtggaaataaaaacttttagaggaaaaacattgtgttttaggagcaa 405  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24833067 ttttctctccattttctctcacttttaatttaacttattatgaaactggaaatgtggaaataaaaacttttagaggaaaaacattgtgttttaggaacaa 24832968  T
Q  406 accttctcttgaggatcattttcaagacgttgaaattgtagcatttcaggaacagaattatctgaaacattactatcaacatattgagaagtatattcac 505  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24832967 accttttcttgaggatcattttcaagacgttgaaattgtagcatttcaggaacagaattatctgaaacattactatcaacatattgagaagcatactcac 24832868  T
Q  506 tacgttgaggctttgtgtgtctttttggtgccacttcttcaaaatggtgtcttgtttttgcttctatggatgcttcttcttcagctgagagatgagtgtc 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24832867 tacgttgaggctttgtgtgtctttttggtgccacttcttcaaaatggtgtcttgtttttgcttctatggatgcttcttcttcagctgagagatgagtatc 24832768  T
Q  606 acttctgtttggccttctaacatcctcca 634  Q
    |||||||||||||||||||||||||||||    
T  24832767 acttctgtttggccttctaacatcctcca 24832739  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 49766643 - 49766562
Alignment:
Q  201 taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766643 taacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 49766562  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 34575569 - 34575495
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34575569 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 34575495  T

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Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 35485385 - 35485464
Alignment:
Q  202 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35485385 aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 35485464  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 36100839 - 36100760
Alignment:
Q  202 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36100839 aacatgaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 36100760  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 10739710 - 10739783
Alignment:
Q  208 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10739710 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 10739783  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 9819741 - 9819670
Alignment:
Q  210 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9819741 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 9819670  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 36020557 - 36020483
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  36020557 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcctggcaaacgca 36020483  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 6057586 - 6057516
Alignment:
Q  211 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  6057586 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca 6057516  T

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Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 5197924 - 5197849
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5197924 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 5197849  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 41514954 - 41515028
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41514954 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 41515028  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 4824307 - 4824236
Alignment:
Q  210 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4824307 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 4824236  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 38695375 - 38695446
Alignment:
Q  210 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38695375 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 38695446  T

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Target: chr2; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 41702293 - 41702219
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41702293 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggtttgactcccggcaaacgca 41702219  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 615420 - 615492
Alignment:
Q  209 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  615420 agcgtttgtagtccaacggttaggataattgccttccaagcaatagatccgggttcgactcccggcaaacgca 615492  T

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Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 23775158 - 23775237
Alignment:
Q  202 aacatcaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23775158 aacaacaagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 23775237  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 43467536 - 43467607
Alignment:
Q  210 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43467536 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacctgggttcgactcccggcaaacgca 43467607  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 43466644 - 43466710
Alignment:
Q  213 tttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacg 279  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||| | ||| ||||||    
T  43466644 tttgtagtccaatggttaggataattgccttctaagcattagacccaggttcgatttccgacaaacg 43466710  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 42461301 - 42461227
Alignment:
Q  207 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42461301 caagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 42461227  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 12694584 - 12694511
Alignment:
Q  209 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694584 agcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaa 12694511  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 12694285 - 12694216
Alignment:
Q  212 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694285 gtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 12694216  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 30514361 - 30514434
Alignment:
Q  208 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30514361 aagcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 30514434  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 38872650 - 38872579
Alignment:
Q  210 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38872650 gcgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 38872579  T

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Target: scaffold0350 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 17011 - 16941
Alignment:
Q  211 cgtttgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgca 281  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  17011 cgtttgtagtccaacagttggaataattgccttccaagcaatagacctgggttagactcccggcaaacgca 16941  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 38554 - 38498
Alignment:
Q  228 ttaggataattgccttccaagcaatagacccgggttcgactcccggcaaacgcaaat 284  Q
    |||||| |||||||||||||||||||||||||||||| |||||| | ||| ||||||    
T  38554 ttaggacaattgccttccaagcaatagacccgggttcaactcccagaaaatgcaaat 38498  T

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