View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-14 (Length: 568)

Name: NF2640-Insertion-14
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-14
NF2640-Insertion-14
[»] chr1 (1 HSPs)
chr1 (8-568)||(6742003-6742564)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Original strand, 6742003 - 6742564
Alignment:
Q  8 catggtaggagcctgctgcaatctc--ccaccccattcacttgtgtaagttaaaaagttctttgg--agatgttgaaacaaacagaacttttacagttat 103  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  6742003 catggtaggagccagctgcaatctctcccaccccattcacttgtgtaagttaaaaagttctttggttagaggttgaaacaaacagaacttttacagttat 6742102  T
Q  104 tttttgggatctatcaaacatgaacaaatgactctagtctttcacaatgcacataatttatctatcattaattaattgagtaattttattgcatctaata 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6742103 tttttgggatctatcaaacatgaacaaatgactctagtctttcacaatgcacataatttatctatcattaattaattgagtaattttattgcatctaata 6742202  T
Q  204 ttgaactattcacactatatttccttgcttcgttccaatatcttgctttgtgcgcctacaattgtcaccatgacacatacaaacacgacatccgcgagga 303  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6742203 ttgaactattcacactatatttccttgcttcgttccaataacttgctttgtgcgcctacaattgtcaccatgacacatagaaacacgacatccgcgagga 6742302  T
Q  304 agaccaacaacatttgtgttactgttgtgggtgtcgaagaagggcacatcactcacctctaaccgaatatatcgatttcaatcattttcaagaatctttg 403  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6742303 agaccaacaacatttgtgttactgttgtgggtgtcgaagaagggaacatcactcacctctaaccgaatatatcgatttcaatcattttcaagaatctttg 6742402  T
Q  404 tgtttccctccnnnnnnnnnnnnnnnnntctttgcgttttttctatgaggttaaagcttctatattgcgttgatctgtgtggcattgtgaaatgcgattt 503  Q
    |||||||||||                 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6742403 tgtttccctcc---aaaacaataaaaaatctttgcgtttttt-tatgaggttaaagcttctatattgcgttgatctgtgtggcattgtgaaatgcgattt 6742498  T
Q  504 gatttcaagaga-nnnnnnnnnnnnngacaaagatttcaagagatctttatgaggtgattttgtga 568  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  6742499 gatttcaagagattatttttttttttgacaaagatttcaagagatctttatgaggtgattttgtga 6742564  T

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