View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-16 (Length: 563)

Name: NF2640-Insertion-16
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-16
NF2640-Insertion-16
[»] chr7 (36 HSPs)
chr7 (7-369)||(6344420-6344780)
chr7 (7-336)||(6328376-6328708)
chr7 (385-481)||(6328184-6328280)
chr7 (185-231)||(6221838-6221884)
chr7 (385-481)||(12645308-12645404)
chr7 (506-563)||(6328058-6328115)
chr7 (506-563)||(6335483-6335539)
chr7 (396-481)||(8037577-8037662)
chr7 (396-481)||(36251683-36251768)
chr7 (411-474)||(16842065-16842128)
chr7 (386-469)||(46021453-46021536)
chr7 (376-481)||(8059858-8059963)
chr7 (384-469)||(9506864-9506949)
chr7 (384-481)||(24333362-24333459)
chr7 (6-53)||(6221715-6221763)
chr7 (386-469)||(41708566-41708647)
chr7 (387-434)||(41780287-41780334)
chr7 (106-144)||(6221777-6221815)
chr7 (387-465)||(32251362-32251439)
chr7 (395-481)||(45329395-45329481)
chr7 (396-445)||(43133149-43133198)
chr7 (376-445)||(46734162-46734231)
chr7 (385-481)||(46910918-46911014)
chr7 (386-481)||(12961834-12961929)
chr7 (387-445)||(7312499-7312557)
chr7 (387-445)||(33906305-33906363)
chr7 (387-465)||(35157111-35157188)
chr7 (396-469)||(44136149-44136223)
chr7 (387-445)||(45236954-45237012)
chr7 (386-451)||(6344325-6344389)
chr7 (387-475)||(26794936-26795025)
chr7 (387-436)||(41862811-41862860)
chr7 (376-481)||(45957344-45957449)
chr7 (386-435)||(46715746-46715795)
chr7 (387-435)||(9380015-9380063)
chr7 (415-475)||(47584688-47584747)
[»] chr1 (29 HSPs)
chr1 (384-479)||(32947641-32947736)
chr1 (385-481)||(44836128-44836224)
chr1 (385-481)||(11080971-11081067)
chr1 (384-481)||(236591-236686)
chr1 (387-465)||(29511132-29511209)
chr1 (385-469)||(8793197-8793281)
chr1 (387-479)||(41651097-41651189)
chr1 (385-466)||(7204533-7204614)
chr1 (376-469)||(13116939-13117032)
chr1 (387-475)||(27078572-27078659)
chr1 (376-468)||(49773477-49773569)
chr1 (399-469)||(27227119-27227189)
chr1 (385-481)||(45751037-45751133)
chr1 (384-466)||(8312553-8312635)
chr1 (387-445)||(40685553-40685611)
chr1 (386-475)||(23225307-23225395)
chr1 (386-479)||(49632578-49632670)
chr1 (387-475)||(40962719-40962806)
chr1 (386-481)||(37186827-37186922)
chr1 (387-465)||(15104068-15104145)
chr1 (387-465)||(24119680-24119757)
chr1 (387-445)||(50248053-50248111)
chr1 (386-479)||(1576397-1576489)
chr1 (386-479)||(5598324-5598416)
chr1 (386-439)||(17540128-17540181)
chr1 (387-479)||(5511807-5511898)
chr1 (387-475)||(13048824-13048911)
chr1 (387-475)||(13053821-13053908)
chr1 (385-433)||(26763402-26763450)
[»] chr8 (29 HSPs)
chr8 (386-481)||(11109867-11109962)
chr8 (411-469)||(40418176-40418234)
chr8 (376-469)||(11021350-11021443)
chr8 (384-469)||(12321008-12321093)
chr8 (385-481)||(32778520-32778616)
chr8 (385-474)||(13403437-13403524)
chr8 (396-481)||(33128175-33128260)
chr8 (385-481)||(24197838-24197934)
chr8 (385-465)||(31941061-31941140)
chr8 (387-465)||(10096636-10096713)
chr8 (387-465)||(14243723-14243800)
chr8 (392-434)||(34839093-34839135)
chr8 (386-432)||(37820965-37821011)
chr8 (384-481)||(31291240-31291337)
chr8 (387-479)||(37817400-37817491)
chr8 (386-481)||(39709634-39709729)
chr8 (387-465)||(25250809-25250886)
chr8 (387-465)||(40999777-40999854)
chr8 (387-445)||(43167163-43167221)
chr8 (387-436)||(11098129-11098178)
chr8 (413-481)||(15589266-15589332)
chr8 (387-436)||(31261010-31261059)
chr8 (387-439)||(2508186-2508238)
chr8 (415-479)||(19649511-19649574)
chr8 (417-465)||(28183737-28183785)
chr8 (396-468)||(30779682-30779754)
chr8 (387-479)||(34642450-34642541)
chr8 (387-435)||(35421674-35421722)
chr8 (387-479)||(44604834-44604925)
[»] chr3 (24 HSPs)
chr3 (386-481)||(54923509-54923604)
chr3 (387-481)||(38417735-38417829)
chr3 (384-468)||(10662005-10662088)
chr3 (396-481)||(40878195-40878278)
chr3 (384-481)||(27157946-27158043)
chr3 (387-445)||(10228981-10229039)
chr3 (387-445)||(15003652-15003710)
chr3 (387-437)||(51053642-51053692)
chr3 (376-445)||(30703104-30703173)
chr3 (386-481)||(31812236-31812329)
chr3 (387-475)||(33886387-33886474)
chr3 (396-475)||(46008868-46008947)
chr3 (387-434)||(47410809-47410856)
chr3 (387-445)||(19961393-19961451)
chr3 (387-445)||(42296735-42296793)
chr3 (396-465)||(2558780-2558848)
chr3 (384-465)||(47665236-47665317)
chr3 (376-445)||(55068940-55069009)
chr3 (376-432)||(2861065-2861121)
chr3 (385-445)||(11029686-11029746)
chr3 (387-479)||(16135026-16135117)
chr3 (385-469)||(33096000-33096084)
chr3 (387-479)||(47570307-47570398)
chr3 (385-445)||(52256798-52256858)
[»] chr2 (24 HSPs)
chr2 (386-481)||(22999098-22999193)
chr2 (386-469)||(32517840-32517923)
chr2 (411-481)||(22382343-22382413)
chr2 (411-481)||(22914369-22914439)
chr2 (396-469)||(39417476-39417548)
chr2 (387-439)||(44765248-44765300)
chr2 (385-481)||(816372-816464)
chr2 (386-481)||(18741408-18741503)
chr2 (386-468)||(25219866-25219947)
chr2 (384-469)||(37103343-37103428)
chr2 (411-466)||(13491074-13491129)
chr2 (376-479)||(18055872-18055974)
chr2 (388-479)||(18469445-18469535)
chr2 (387-445)||(13268021-13268079)
chr2 (386-436)||(30854790-30854840)
chr2 (411-469)||(40710857-40710915)
chr2 (387-465)||(40812041-40812118)
chr2 (376-465)||(1910814-1910902)
chr2 (387-436)||(24381269-24381318)
chr2 (415-464)||(41197015-41197063)
chr2 (390-481)||(19954910-19954999)
chr2 (387-463)||(23957076-23957151)
chr2 (376-436)||(33898244-33898304)
chr2 (387-479)||(43461347-43461438)
[»] chr4 (28 HSPs)
chr4 (385-481)||(38944391-38944487)
chr4 (376-469)||(9696314-9696407)
chr4 (384-473)||(22988009-22988098)
chr4 (386-481)||(37340118-37340212)
chr4 (384-473)||(22717119-22717208)
chr4 (396-481)||(46343362-46343447)
chr4 (385-481)||(32057734-32057829)
chr4 (386-445)||(38814606-38814665)
chr4 (386-445)||(38882741-38882800)
chr4 (386-469)||(46107416-46107499)
chr4 (386-468)||(48391712-48391794)
chr4 (396-465)||(13389053-13389121)
chr4 (386-455)||(35463842-35463911)
chr4 (385-469)||(24870619-24870703)
chr4 (385-465)||(28758399-28758479)
chr4 (387-475)||(46552949-46553036)
chr4 (384-455)||(13849377-13849448)
chr4 (387-465)||(579269-579346)
chr4 (387-481)||(24478463-24478557)
chr4 (387-445)||(24712112-24712170)
chr4 (387-445)||(34660837-34660895)
chr4 (415-465)||(37050753-37050802)
chr4 (386-435)||(13218220-13218269)
chr4 (387-479)||(3037261-3037352)
chr4 (415-451)||(5880326-5880362)
chr4 (387-475)||(6328868-6328955)
chr4 (387-479)||(28983756-28983847)
chr4 (415-479)||(54086063-54086126)
[»] scaffold0160 (1 HSPs)
scaffold0160 (376-481)||(22096-22200)
[»] scaffold0633 (1 HSPs)
scaffold0633 (387-479)||(3807-3899)
[»] chr5 (33 HSPs)
chr5 (385-475)||(22792126-22792216)
chr5 (411-481)||(41215245-41215315)
chr5 (396-469)||(26526546-26526619)
chr5 (385-479)||(5203573-5203668)
chr5 (386-469)||(10083951-10084034)
chr5 (376-475)||(11408386-11408485)
chr5 (386-437)||(13542858-13542908)
chr5 (387-465)||(4429968-4430045)
chr5 (396-442)||(18990583-18990629)
chr5 (387-445)||(26802358-26802416)
chr5 (387-445)||(26809908-26809966)
chr5 (387-445)||(26824935-26824993)
chr5 (416-481)||(6525892-6525957)
chr5 (386-479)||(43237832-43237924)
chr5 (390-433)||(9955146-9955189)
chr5 (386-457)||(42436352-42436423)
chr5 (387-445)||(671105-671163)
chr5 (387-445)||(1287339-1287397)
chr5 (387-465)||(4874272-4874349)
chr5 (387-445)||(6053097-6053155)
chr5 (409-455)||(11462783-11462829)
chr5 (387-445)||(16371518-16371576)
chr5 (376-422)||(29214883-29214929)
chr5 (387-465)||(33028254-33028331)
chr5 (387-465)||(36259821-36259898)
chr5 (416-481)||(1271150-1271215)
chr5 (385-434)||(14570500-14570549)
chr5 (387-436)||(38682952-38683001)
chr5 (415-479)||(9053984-9054047)
chr5 (387-479)||(9068827-9068918)
chr5 (387-479)||(17080489-17080580)
chr5 (387-435)||(19867337-19867385)
chr5 (385-465)||(34856603-34856682)
[»] scaffold0223 (1 HSPs)
scaffold0223 (385-480)||(22942-23037)
[»] chr6 (11 HSPs)
chr6 (384-469)||(2747571-2747656)
chr6 (415-475)||(29183710-29183769)
chr6 (384-455)||(15095209-15095280)
chr6 (387-445)||(2301425-2301483)
chr6 (387-445)||(8939650-8939708)
chr6 (385-475)||(8977177-8977266)
chr6 (387-445)||(29479453-29479511)
chr6 (413-479)||(31057882-31057947)
chr6 (388-469)||(31242014-31242093)
chr6 (386-419)||(32389580-32389613)
chr6 (387-443)||(17546060-17546116)
[»] scaffold0002 (1 HSPs)
scaffold0002 (387-435)||(411672-411720)
[»] scaffold1112 (1 HSPs)
scaffold1112 (134-231)||(1409-1504)
[»] scaffold0027 (1 HSPs)
scaffold0027 (385-474)||(19332-19419)
[»] scaffold0244 (1 HSPs)
scaffold0244 (387-445)||(7803-7861)
[»] scaffold0070 (1 HSPs)
scaffold0070 (387-443)||(42076-42132)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 6344780 - 6344420
Alignment:
Q  7 aacataaatattaaataaataaatattcgtattatacgtttaattcgtcatgtgtcccacaaagtataaattgggtcagtgcccggcaagatgttgcaaa 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6344780 aacataaatattaaataaataaatattcgtattaaacgtttaattcgtcatgtgtcccacaaagtataaattgggtcagtgcccggcaagatgttgcaaa 6344681  T
Q  107 gttatttttcaacgctttgtttttgcttttcaaaagagtcactctccaatgaatttaaaatgaaaacgatttatatatttaacgtttttatcaaatggca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  6344680 gttatttttcaacgctttgtttttgcttttcaaaagagtcactctccaatgaatttaaaatgaaaatgatt--tatatttaacgtttttatcaaatggca 6344583  T
Q  207 tcttaaataactagccaaacaagagacttcatttcctctccataaaaacttatttacgcatgtaatttatgcatggcatgagttagtttatttttctttc 306  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  6344582 tcttaaataactagccaaacaagagaattcatttccgctccataaaaacttatttacgcatgtcatttatgcatggcatgagttagtttatttctctttc 6344483  T
Q  307 ctacaagtatagtaacatccaactccatatnnnnnnnnttcatttccgctctataaacatctt 369  Q
    |||||| |||||||||||||||||||||||        | |||||||||||||||||||||||    
T  6344482 ctacaaatatagtaacatccaactccatataaaaaaaatccatttccgctctataaacatctt 6344420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 6328708 - 6328376
Alignment:
Q  7 aacataaatattaaataaataaatattcgtattatacgtttaattcgtcatgtgtcccacaaagtataaattgggtcagt----gcccggcaagatgttg 102  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    | ||||||||||||||    
T  6328708 aacataaatattaaataaataaatattcgtattaaacgtttaattcgtcatgtgtcccacaaagtataaatttggtcagtcagtgtccggcaagatgttg 6328609  T
Q  103 caaagttatttttcaacgctttgtttttgcttttcaaaagagtcactctccaatgaatttaaaatgaaaacgatttatatatttaacgtttttatcaaat 202  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  6328608 caaagttatttttcaatgctttgtttt-gcttttcaaaagagtcactctccaatgaattcaaaatcaaaacgatttatttatttaacgtttttatcaaat 6328510  T
Q  203 ggcatcttaaataactagccaaacaagagacttcatttcctctccataaaaacttatttacgcatgtaatttatgcatggcatgagttagtttatttttc 302  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6328509 ggcatcttaaataactagccaaacaagagaaatcatttccgctccataaaaacttatttacgcatgttatttatgcatggcatgagttagtttatttttc 6328410  T
Q  303 tttcctacaagtatagtaacatccaactccatat 336  Q
    ||||||| || |||||||||||||||||||||||    
T  6328409 tttcctaaaaatatagtaacatccaactccatat 6328376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 6328280 - 6328184
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||    
T  6328280 caaaaatgtcaaaattgttaggttggacgtcatgactagggttcgaaccccgatacctccactttatgtgtgtgagtttatgatggttttgtcatct 6328184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 6221838 - 6221884
Alignment:
Q  185 ttaacgtttttatcaaatggcatcttaaataactagccaaacaagag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6221838 ttaacgtttttatcaaatggcatcttaaataactagccaaacaagag 6221884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 12645404 - 12645308
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||| |||||||||||  | |||| ||||||| ||||||||||||  || ||||| ||||||||| || |||||||||| |||||||||||    
T  12645404 caaaaatgtcgaaattgttaggccggacgtaatgaccgaggttcgaacccctgtacctccactttatgtgtgtgggtttatgatggttttgtcatct 12645308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 563
Target Start/End: Complemental strand, 6328115 - 6328058
Alignment:
Q  506 taaacaatactattttgtttttatcttatttacttaccttatgcactttacaatttca 563  Q
    |||||||||||||||||||||||||||  ||||||||||| | |||||||||||||||    
T  6328115 taaacaatactattttgtttttatctttattacttaccttctacactttacaatttca 6328058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 563
Target Start/End: Complemental strand, 6335539 - 6335483
Alignment:
Q  506 taaacaatactattttgtttttatcttatttacttaccttatgcactttacaatttca 563  Q
    |||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  6335539 taaacaatactattttgtttttatctta-ttacttaccttctacactttacaatttca 6335483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 8037577 - 8037662
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||| |||||||| ||||||||| ||| |||||||| ||  || ||||| ||||||||||||||||||||||| ||||| |||||    
T  8037577 aaattattaggttggacgtcatgatcggagttcgaactccagtacctccattttatgtgtatgagtttatgatgattttgccatct 8037662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 36251683 - 36251768
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||  | |||||||| ||| ||||||||||||| ||| |||| ||||||||| ||||||||||||| ||||| |||||    
T  36251683 aaattgttaggccggacgtcatggccgaggttcgaaccccggtatttccactttatgtgtgtgagtttatgatggttttgccatct 36251768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 16842128 - 16842065
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgttttt 474  Q
    |||||||||| | | |||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  16842128 acgtcatgactgagattcgaaccccgatacctccactttatgtgtatgagtttatgatggtttt 16842065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 46021536 - 46021453
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||| | |||||||||||  | | |||||||||||||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  46021536 aaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccattttgtgtgtgtgagtttatgatg 46021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 8059858 - 8059963
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||  ||||||||||||||||||||||| |  |||||||| |||||||||||||||| || ||| | ||| | ||| ||||||| | |||  ||||    
T  8059858 ctcaattggcaaaaatgtcaaaattgttaggtcgggcgtcatgatcggggttcgaaccccggtacctcaactttgtatgtgtgagtttgtcatgactttg 8059957  T
Q  476 tcatct 481  Q
    ||||||    
T  8059958 tcatct 8059963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 469
Target Start/End: Complemental strand, 9506949 - 9506864
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||| ||||||||||||||  | || ||||||||| ||||||||| ||| || ||||| ||| ||||| |||||||||||||    
T  9506949 acaaaaatatcaaaattgttaggccggacatcatgaccgaggttcgaactccggtacctccactttgtgtgtgtgagtttatgatg 9506864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 24333362 - 24333459
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||||| |||||||||||  || |||||||| |||||||||||| ||  || ||||| |||||||||  ||  |||||||| |||||||||||    
T  24333362 acaaaaatgtcgaaattgttaggccgagcgtcatgatcggggttcgaactccagtacctccactttatgtgtgcgaacttatgatggttttgtcatct 24333459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 6221715 - 6221763
Alignment:
Q  6 caacataaatattaaataaataa-atattcgtattatacgtttaattcg 53  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  6221715 caacataaatattaaataaataatatattcgtattaaacgtttaattcg 6221763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 41708647 - 41708566
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||||||||||||| | | || |||| ||||||||||||||||||| ||||| ||  ||| | |||||||||||||    
T  41708647 aaaaatgtcaaaattgttaggtcggatgttatgatcggggttcgaaccccgatacctccactt--tgtatgtgagtttatgatg 41708566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 41780287 - 41780334
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccc 434  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||||    
T  41780287 aaaatgtcgaaattgttaggttggatgtcatgaccggggttcgaaccc 41780334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 6221777 - 6221815
Alignment:
Q  106 agttatttttcaacgctttgtttttgcttttcaaaagag 144  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6221777 agttttttttcaacgctttgtttttgcttttcaaaagag 6221815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 32251439 - 32251362
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | ||||||||| || | | ||||||||||||||||||||||||||| |||| | |||||||| |||||||||    
T  32251439 aaaatgccgaaattgttaagtcggatgtcatgaccggggttcgaaccccgatacctcc-acttatgtgtgtgagtttat 32251362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 45329395 - 45329481
Alignment:
Q  395 aaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||||||  | || | |||| |||| ||||||||| |||| || || ||||||||| |||||||||||||| ||||||||||    
T  45329395 aaaattgttaggccggacattatgatcgggattcgaacccggatacctacattttatgtgtgtgagtttatgatgtctttgtcatct 45329481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 43133198 - 43133149
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    ||||||||||| |||| |||||||||||||||||||||||| || |||||    
T  43133198 aaattgttaggctgaatgtcatgaccggggttcgaaccccggtacctcca 43133149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 445
Target Start/End: Complemental strand, 46734231 - 46734162
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||  |||||||||| ||||||||||| || | ||||||| |||||||||||||||| || |||||    
T  46734231 ctcaattggcaaaaatgtcgaaattgttaggctggatgtcatgatcggggttcgaaccccgttacctcca 46734162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 46911014 - 46910918
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| || ||| |||||||  ||||||||||| ||||||||||||| || || ||| | ||| ||||| ||||||||||||   ||||||||||    
T  46911014 caaaaatatcgaaactgttaggccgaacgtcatgatcggggttcgaacctcggtacctcaactttgtgtgtctgagtttatgatagatttgtcatct 46910918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 12961929 - 12961834
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||  |||||||||||  | || |||||| ||| ||||||||| || || || |||||| ||||| |||||||||||||  ||||||||||    
T  12961929 aaaaatgtagaaattgttaggccggacatcatgatcggagttcgaacctcggtaccttcaatttgtgtgtgtgagtttatgatgactttgtcatct 12961834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 7312557 - 7312499
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  | | |||||||||||||||||||||||| || |||||    
T  7312557 aaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcca 7312499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 33906305 - 33906363
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  | |||||||||||||||||||||| ||| || |||||    
T  33906305 aaaatgccaaaattgttaggccggacgtcatgaccggggttcgaacaccggtacctcca 33906363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 35157188 - 35157111
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | |||||||||||  | | |||||||||||||||||||||||| || |||| | |||||||| |||||||||    
T  35157188 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttat 35157111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 469
Target Start/End: Complemental strand, 44136223 - 44136149
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccc-cgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||| ||||| ||| ||||| |||||||||| ||||| ||||| ||| ||||| |||||||| ||||    
T  44136223 aaattgttaggtcgaacgacataaccggagttcgaaccctcgatacctccactttgtgtgtgtgagtttaagatg 44136149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 45236954 - 45237012
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||  | | ||||||||||||||||||||||||||| |||||    
T  45236954 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccgatacctcca 45237012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 6344389 - 6344325
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttat 451  Q
    ||||||||||||||| |||||||| | ||||||||| || ||||||| |||||| ||||| |||||    
T  6344389 aaaaatgtcaaaatttttaggttggaggtcatgacc-ggattcgaactccgatacctccattttat 6344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 26794936 - 26795025
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatt-tatgtgtatgagtttatgatgtttttg 475  Q
    |||||| |||||||||||| | | | | |||||||||||||||||| ||| || ||||| || ||||||| ||||||||| ||| |||||    
T  26794936 aaaatgccaaaattgttagatcggatgccatgaccggggttcgaactccggtacctccacttatatgtgtgtgagtttataatggttttg 26795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 41862811 - 41862860
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    |||||||| |||||||||||| | | ||||| ||||||||||||||||||    
T  41862811 aaaatgtcgaaattgttaggtcggatgtcataaccggggttcgaaccccg 41862860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 481
Target Start/End: Complemental strand, 45957449 - 45957344
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||  |||||||| |||||||||||    | ||||||||| | |||||||||||||| || ||||| ||| ||||| | ||||||||| |  ||||    
T  45957449 ctcaattggcaaaaatgccaaaattgttaaaccggacgtcatgatcagggttcgaaccccggtacctccactttgtgtgtgttagtttatgaagactttg 45957350  T
Q  476 tcatct 481  Q
    ||||||    
T  45957349 tcatct 45957344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 46715795 - 46715746
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    ||||||||| |||||||||||  ||| | |||||||||||||||||||||    
T  46715795 aaaaatgtcgaaattgttaggcagaatgccatgaccggggttcgaacccc 46715746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 9380015 - 9380063
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    |||||||| |||||||||||  | | |||||||||||||||||||||||    
T  9380015 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaacccc 9380063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 47584747 - 47584688
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||||||||||||||||| || |||| | |||||||| ||||||||| ||| |||||    
T  47584747 catgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttataatggttttg 47584688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 384 - 479
Target Start/End: Original strand, 32947641 - 32947736
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||| ||||||||||||  ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||    
T  32947641 acaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcgaaccccgacatctccactttatgtgtgtgagtttatgatggttttgtcat 32947736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 44836224 - 44836128
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| ||||||||||||||| | ||||||||| |||||||||||||||| |||||||| ||||| ||| |||||||||||||  ||||||||||    
T  44836224 caaaaatatcaaaattgttaggtcggacgtcatgatcggggttcgaaccccggtatctccactttatatgtgtgagtttatgatggctttgtcatct 44836128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 11081067 - 11080971
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||  |||||| ||||  | |||| ||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  11081067 caaaaatgttgaaattgctaggccggacgttatgaccggggttcaaaccccgatacctccactttatgtgtatgagtatatgatggttttgtcatct 11080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 236591 - 236686
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||||| |||||||||||  | |||||||||||||||||||||||||| || || || ||||||||  |||||||||||||  ||||||||||    
T  236591 acaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaaccccggtaccttcactttatgtg--tgagtttatgatgactttgtcatct 236686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 29511132 - 29511209
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | |||||||||||  ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  29511132 aaaatgacgaaattgttaggccgaatgtcatgaccggggttcgaaccccgatacctcc-atttatgtgtatgagtttat 29511209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 8793281 - 8793197
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||| |||||||||||| |  | |||||||||||||||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  8793281 caaaaatatcaaaattgttaagccgtacgtcatgaccggggttcgaaccccggtacctccactttgtgtgtgtgagtttatgatg 8793197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 41651097 - 41651189
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||||| ||||||||| ||||||||||| |||| || || || ||||||||| ||||||||| ||| |||||||||    
T  41651097 aaaatgccgaaattgttaggttggacgtcatgatcggggttcgaatcccggtaccttcattttatgtgtgtgagtttataatggttttgtcat 41651189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 7204614 - 7204533
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatg 466  Q
    |||||||| | |||||||||||  |||| |||||||||||||||||||||||||| ||||| ||| ||| | ||||||||||    
T  7204614 caaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactttgtgtatgtgagtttatg 7204533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 469
Target Start/End: Original strand, 13116939 - 13117032
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||| ||||||||||||| ||||||||||| || |||||||||||  ||||||||| ||| || || || ||| ||||| |||||||||||||    
T  13116939 ctcaactaacaaaaatgtcgaaattgttaggctggacgtcatgaccaaggttcgaactccggtaccttcactttgtgtgtgtgagtttatgatg 13117032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 27078572 - 27078659
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||| |||||||||||  | | |||||||||||||||||||||||| || |||| | |||||||| ||||||||||||| |||||    
T  27078572 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttatgatggttttg 27078659  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 468
Target Start/End: Complemental strand, 49773569 - 49773477
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgat 468  Q
    ||||||||||||||||||  |||||||||||  ||||||||| ||| | ||||||||||||||| ||| | ||| ||||| | ||||||||||    
T  49773569 ctcaattaacaaaaatgttgaaattgttaggccgaacgtcataaccagagttcgaaccccgatacctctactttgtgtgtgtaagtttatgat 49773477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 27227119 - 27227189
Alignment:
Q  399 ttgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||| ||| ||||||| |||||||||||||||  || ||||| |||||||||||||||||| ||||    
T  27227119 ttgttaggtcgaaagtcatgatcggggttcgaacccctgtaactccactttatgtgtatgagtttaggatg 27227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 45751133 - 45751037
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||| | |||||||||||||  ||||||| | ||||||| |||||||| || ||| | ||||||| |  |||||||||||| |||||||||||    
T  45751133 caaaaatgccgaaattgttaggttatacgtcataatcggggttagaaccccggtacctctattttatgtatgggagtttatgatggttttgtcatct 45751037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 8312635 - 8312553
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatg 466  Q
    ||||||||||| |||||||||||  |||||| |||| || ||||||||||||| || ||||| ||| ||||  ||||||||||    
T  8312635 acaaaaatgtcgaaattgttaggccgaacgttatgatcgaggttcgaaccccggtacctccactttgtgtgagtgagtttatg 8312553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 40685553 - 40685611
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||| |||||||||||| | | |||||||||||||||||||| |||||| |||||    
T  40685553 aaaatgtcgaaattgttaggtcggatgtcatgaccggggttcgaactccgatacctcca 40685611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 23225395 - 23225307
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||||||||||||||||| | | | |||||| ||||||||||||||| || |||| | || ||||| ||||||||| ||| |||||    
T  23225395 aaaaatgtcaaaattgttaggtcggatgccatgacaggggttcgaaccccggtacctcc-acttgtgtgtgtgagtttataatggttttg 23225307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 49632578 - 49632670
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||||| | ||||||||||| || | |||||||||| |||||||||||||||| |||| | || ||||| ||||||||| ||| |||| ||||    
T  49632578 aaaaatgccgaaattgttaggctggatgtcatgaccgaggttcgaaccccgatacctcc-acttgtgtgtgtgagtttataatgattttatcat 49632670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 40962806 - 40962719
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||| ||||||| ||||| || | | ||||| ||||||||||||||||||| |||| | |||||||| ||||||||| ||| |||||    
T  40962806 aaaatgccaaaattattaggctggatgccatgatcggggttcgaaccccgatacctcc-acttatgtgtgtgagtttataatggttttg 40962719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 37186922 - 37186827
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| | ||||||||| |  | ||||||||||| |||||||||| | | || ||||| ||| ||||| |||||||||||||  ||||||||||    
T  37186922 aaaaatgccgaaattgttaagccggacgtcatgaccagggttcgaactctggtacctccactttgtgtgtttgagtttatgatggctttgtcatct 37186827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 15104068 - 15104145
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| |||||||||||||  | | ||||||| ||||||||||||||||||| || | | |||||||| |||||||||    
T  15104068 aaaatgccaaaattgttaggccggatgtcatgatcggggttcgaaccccgatacct-ctacttatgtgtgtgagtttat 15104145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 24119680 - 24119757
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | |||||||||||  | | |||||||||||||||||||||| | ||||||| | |||||||| |||||||||    
T  24119680 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccctggtatctcc-acttatgtgtgtgagtttat 24119757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 50248053 - 50248111
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||| |||||||||||  | | |||||||||| |||||||||||||||| |||||    
T  50248053 aaaatgtcgaaattgttaggccggatgtcatgaccgaggttcgaaccccgatacctcca 50248111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 1576397 - 1576489
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||||| |||||||||| | | | | | |||||||||||||||||| ||| || |||| | |||||||| ||||||||| ||| |||||||||    
T  1576397 aaaaatgccaaaattgtttgatcggatgccatgaccggggttcgaactccgttacctcc-acttatgtgtgtgagtttataatggttttgtcat 1576489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 5598324 - 5598416
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||||| | |||||||||||| | | ||||||||||| |||||||||||| || |||| | || ||||| ||||||||| |||  ||||||||    
T  5598324 aaaaatgccgaaattgttaggtcggatgtcatgaccggagttcgaaccccggtacctcc-acttgtgtgtgtgagtttataatggctttgtcat 5598416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 17540181 - 17540128
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgata 439  Q
    ||||||| | |||||||||||    |||||||||||||||||||||||||||||    
T  17540181 aaaaatgccgaaattgttaggccagacgtcatgaccggggttcgaaccccgata 17540128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 5511807 - 5511898
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||| ||||||||||| |||| | |||||  |||||||||||  || || |||| |||||||| | ||||||||| ||| |||||||||    
T  5511807 aaaatgtcgaaattgttaggctgaatgccatgattggggttcgaacttcggtacctcc-atttatgtatgtgagtttataatggttttgtcat 5511898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 13048911 - 13048824
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    ||||| || |||||||||||  | | ||||||| ||| |||||||||||| || |||| |||||||||| ||||||||| ||| |||||    
T  13048911 aaaatatcgaaattgttaggccggatgtcatgatcggagttcgaaccccggtacctcc-atttatgtgtgtgagtttataatggttttg 13048824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 13053908 - 13053821
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    ||||| || |||||||||||  | | ||||||| ||| |||||||||||| || |||| |||||||||| ||||||||| ||| |||||    
T  13053908 aaaatatcgaaattgttaggccggatgtcatgatcggagttcgaaccccggtacctcc-atttatgtgtgtgagtttataatggttttg 13053821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 26763450 - 26763402
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacc 433  Q
    |||||||| | |||||||||||| | |||||| ||||||||||||||||    
T  26763450 caaaaatgccgaaattgttaggtcggacgtcacgaccggggttcgaacc 26763402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 11109962 - 11109867
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| ||||||||||| | || |||||||||| ||||||||||||||| |||||||| ||||||||| | ||||||||||| |||||||||||    
T  11109962 aaaaatgccaaaattgttaagctggacgtcatgactggggttcgaaccccggtatctccactttatgtgtgttagtttatgatgattttgtcatct 11109867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 40418176 - 40418234
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||||||||    
T  40418176 acgtcatgaccggagttcgaaccccgatacctccactttatgtgtgtgagtttatgatg 40418234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 469
Target Start/End: Original strand, 11021350 - 11021443
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||| || |||||||||| ||||| |||||| | ||||||||||| | |||||||||||| || ||||| ||| ||||| |||||||||||||    
T  11021350 ctcaactagcaaaaatgtcgaaattattaggtcggacgtcatgacctgagttcgaaccccggtacctccactttgtgtgtgtgagtttatgatg 11021443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 12321008 - 12321093
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||||||||||||||  |||||||| |||| | ||||||||||||||| ||| | ||| || || |||||||||||||    
T  12321008 acaaaaatgtcaaaattgttaggccgaacgtcacgaccagagttcgaaccccgatacctctactttgtgcgtgtgagtttatgatg 12321093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 32778520 - 32778616
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||||||| ||| || | ||||||||| ||||||| |||| |||||| ||||| ||| ||||| || ||||||||||  ||||||||||    
T  32778520 caaaaatgtcaaaattattaagtcgtacgtcatgatcggggtttgaactccgatacctccactttgtgtgtgtgggtttatgatggctttgtcatct 32778616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 13403524 - 13403437
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgttttt 474  Q
    ||||||| || ||||||||||| |||||||||| ||||| |||||||||||| || ||||| ||  ||||| ||||||||||||| ||||    
T  13403524 caaaaatatcgaaattgttaggctgaacgtcataaccggagttcgaaccccggtacctccactt--tgtgtgtgagtttatgatggtttt 13403437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 481
Target Start/End: Complemental strand, 33128260 - 33128175
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||  ||||||||||| |||||||||||||||| || ||||| ||| ||| | ||||||||| |||  ||||||||||    
T  33128260 aaattgttaggccgaacgtcatgatcggggttcgaaccccggtacctccactttgtgtatgtgagtttattatgcatttgtcatct 33128175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 24197934 - 24197838
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||| ||||| ||||||   ||  ||||| | || ||||||| |||||| ||||| ||||||||| ||||||||||||| |||||||||||    
T  24197934 caaaaatgtcgaaattattaggtctgacaacatgatcaggattcgaactccgatacctccactttatgtgtgtgagtttatgatggttttgtcatct 24197838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 465
Target Start/End: Complemental strand, 31941140 - 31941061
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| | ||||||||||| || | ||||||| ||||||||||||||||||| |||| | |||||||| |||||||||    
T  31941140 caaaaatgccgaaattgttaggctggatgtcatgatcggggttcgaaccccgatacctcc-acttatgtgtgtgagtttat 31941061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 10096636 - 10096713
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | | ||||||||||||||||||||||||| |||| | |||||||| |||||||||    
T  10096636 aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccccgatacctcc-acttatgtgtgtgagtttat 10096713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 14243723 - 14243800
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | ||||||||||| |||| |||||||||| ||||||||||||| || |||| |||| ||||| |||||||||    
T  14243723 aaaatgccgaaattgttaggctgaatgtcatgaccgaggttcgaaccccggtacctcc-atttgtgtgtgtgagtttat 14243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 34839135 - 34839093
Alignment:
Q  392 gtcaaaattgttaggttgaacgtcatgaccggggttcgaaccc 434  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  34839135 gtcaaaattgttaggttgaacgtcatgatcgcggttcgaaccc 34839093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 37821011 - 37820965
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaac 432  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37821011 aaaaatgtcaaaattgttaggttggacgtcatgatcggggtttgaac 37820965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 31291240 - 31291337
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| | |||||||||||  ||||||||||| ||||||||||||   | || || || ||| ||| | ||||||||||||| |||||||||||    
T  31291240 acaaaaatgccgaaattgttaggccgaacgtcatgatcggggttcgaactttggtaccttcattttgtgtttgtgagtttatgatggttttgtcatct 31291337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 37817400 - 37817491
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||| | | | ||||||||||||||||||||||||| |||| | || ||||| ||||||||| |||  ||||||||    
T  37817400 aaaatgacgaaattgttaggtcggatgccatgaccggggttcgaaccccgatacctcc-acttgtgtgtgtgagtttataatggctttgtcat 37817491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 39709729 - 39709634
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| ||||||||||   | ||||| |||| ||||||| ||| | |||| ||||| ||||| ||| ||||||||||||| ||||| |||||    
T  39709729 aaaaatgtcgaaattgttagaccggacgtcgtgactggggttcaaactctgatacctccactttatatgtgtgagtttatgatggttttgccatct 39709634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 25250809 - 25250886
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| |||||||||||||  | | | |||||||||||||||||||||| || |||| | |||||||| |||||||||    
T  25250809 aaaatgccaaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttat 25250886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 40999777 - 40999854
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | | |||||||||| |||||||||||||| |||| | |||||||||||| |||||    
T  40999777 aaaatgtcgaaattgttaggccggatgccatgaccgggattcgaaccccgatacctcc-acttatgtgtatgactttat 40999854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 43167163 - 43167221
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||| ||||||| |||||  | ||||||| ||||||||||||||||||| |||||    
T  43167163 aaaatgtcgaaattgtaaggtttgatgtcatgatcggggttcgaaccccgatacctcca 43167221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 11098178 - 11098129
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    ||||| || |||||||||||| ||| |||||||| |||||||||||||||    
T  11098178 aaaatatcgaaattgttaggtcgaatgtcatgactggggttcgaaccccg 11098129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 481
Target Start/End: Complemental strand, 15589332 - 15589266
Alignment:
Q  413 gtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||  |||||||||| ||| ||||| ||||||||  |||||||||||||  ||||||||||    
T  15589332 gtcatgaccggaattcgaacccctatacctccactttatgtg--tgagtttatgatgaatttgtcatct 15589266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 31261059 - 31261010
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    |||||||| |||||||||||| | ||| ||||| ||||||||||||||||    
T  31261059 aaaatgtcgaaattgttaggtcggacgccatgatcggggttcgaaccccg 31261010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 2508238 - 2508186
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgata 439  Q
    |||||| |||||||||||||  | | |||||||||||||||||||| ||||||    
T  2508238 aaaatgccaaaattgttaggacggatgtcatgaccggggttcgaactccgata 2508186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 19649574 - 19649511
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||||||||||||||| || |||| | |||||||| ||||||||| |||  ||||||||    
T  19649574 catgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttataatggctttgtcat 19649511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 28183785 - 28183737
Alignment:
Q  417 tgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    ||||||||||||||||||||| | ||||| ||| ||||| |||||||||    
T  28183785 tgaccggggttcgaaccccgacacctccactttgtgtgtgtgagtttat 28183737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 30779682 - 30779754
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgat 468  Q
    |||||||||||  | || |||| |||| | |||||||||||||| ||||| ||| ||||| ||||||||||||    
T  30779682 aaattgttaggccggacatcataaccgcgtttcgaaccccgatacctccactttgtgtgtttgagtttatgat 30779754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 34642541 - 34642450
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||| | | ||||||||||||||||||||  || || || |||||| ||||| ||||||||| |||  ||||||||    
T  34642541 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaacatcggtacct-caatttgtgtgtgtgagtttataatgactttgtcat 34642450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 35421722 - 35421674
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    |||||||| |||||||||||  ||| | |||||||||||||||||||||    
T  35421722 aaaatgtcgaaattgttaggccgaatgccatgaccggggttcgaacccc 35421674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 44604925 - 44604834
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||| | | | ||||| |||||||||||||||| || |||| | |||||||| ||||||||| ||  |||||||||    
T  44604925 aaaatgccgaaattgttaggtcggatgccatgatcggggttcgaaccccggtacctcc-acttatgtgtgtgagtttataatagttttgtcat 44604834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 54923509 - 54923604
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||| ||||||  |||| ||| ||||| ||| ||||||||| |||||||||||    
T  54923509 aaaaatgtcgaaattgttaggtcggacgtcatgaccggggttcgaactccgatacttccattttgtgtgtgtgaatttatgatgattttgtcatct 54923604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 38417829 - 38417735
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||| ||||||||||||||| | ||||||||||| | ||||||||||||||| | | | ||||||||| ||||||||| ||| |||||||||||    
T  38417829 aaaatatcaaaattgttaggtcggacgtcatgaccagagttcgaaccccgatacccctactttatgtgtgtgagtttataatgattttgtcatct 38417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 468
Target Start/End: Original strand, 10662005 - 10662088
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgat 468  Q
    ||||||||| | |||||||||||||| ||||||||  ||||||||||| ||||||| ||||| |||| |||| ||||||||||||    
T  10662005 acaaaaatgccgaaattgttaggttggacgtcatggtcggggttcgaa-cccgatacctccactttacgtgtgtgagtttatgat 10662088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 396 - 481
Target Start/End: Complemental strand, 40878278 - 40878195
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||| |||||||||||  | |||||||||||||||| ||||| ||||||||  ||||||||| ||| |||||| ||||    
T  40878278 aaattgttaggtcgaacgtcatgattgaggttcgaaccccgatacctccactttatgtg--tgagtttattatggttttgttatct 40878195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 27157946 - 27158043
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| | |||||||| ||  | |||| |||| ||||||||||||| | ||| ||| | ||||||||||||||||||||||| ||||| |||||    
T  27157946 acaaaaatgccgaaattgtttggcaggacgttatgatcggggttcgaacctcaatacctctattttatgtgtatgagtttatgatggttttgccatct 27158043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 10228981 - 10229039
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||||| || |||||    
T  10228981 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctcca 10229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 15003652 - 15003710
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||| | | |||||||||||||||||||||||| || |||||    
T  15003652 aaaatgccaaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 15003710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 51053642 - 51053692
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccga 437  Q
    |||||| | |||||||||||| ||||||||||| |||||||||||||||||    
T  51053642 aaaatgccgaaattgttaggtcgaacgtcatgatcggggttcgaaccccga 51053692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 30703104 - 30703173
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||  ||||||| || ||||||||||| || | |||||||||||||||||||||||| || |||||    
T  30703104 ctcaattggcaaaaatatcgaaattgttaggctggatgtcatgaccggggttcgaaccccgttacctcca 30703173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 31812236 - 31812329
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| ||||| ||||||   | || ||||||||||||||||| |||| | ||||| ||||||||  || |||||||||| |||||||||||    
T  31812236 aaaaatgtcgaaattattaggtctgatgtaatgaccggggttcgaactccgacacctccactttatgtg--tgtgtttatgatggttttgtcatct 31812329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 33886474 - 33886387
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||| | || ||||| ||||||||| ||| |||||    
T  33886474 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcc-acttgtgtgtgtgagtttataatggttttg 33886387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 475
Target Start/End: Original strand, 46008868 - 46008947
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||||||  | ||||||||| ||| |||||||| | |||| ||||| ||| |||||||||||||| |||| |||||    
T  46008868 aaattgttaggccggacgtcatgatcggagttcgaactcagatacctccactttgtgtgtatgagtttacgatggttttg 46008947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 47410856 - 47410809
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccc 434  Q
    |||||||| |||||||||||| | | ||||||||||||||||||||||    
T  47410856 aaaatgtcgaaattgttaggtcggatgtcatgaccggggttcgaaccc 47410809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 19961393 - 19961451
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||| |||||||||||| | | |||||||| |||||||| |||||| ||||||||    
T  19961393 aaaatgtcgaaattgttaggtcggatgtcatgactggggttcgtaccccggtatctcca 19961451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 42296735 - 42296793
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  | | |||||||||||||||||||||||| || |||||    
T  42296735 aaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcca 42296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 2558780 - 2558848
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||||||| | | ||||||| ||||||| ||||||||||| |||| | |||||||| |||||||||    
T  2558780 aaattgttaggtcggatgtcatgatcggggtttgaaccccgatacctcc-acttatgtgtgtgagtttat 2558848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 47665317 - 47665236
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    ||||||||||| |||||||||||  | || || ||| ||||||| |||| || ||| ||||| ||||||||| |||||||||    
T  47665317 acaaaaatgtcgaaattgttaggccggacatcttgatcggggtttgaactccaatacctccactttatgtgtgtgagtttat 47665236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 445
Target Start/End: Original strand, 55068940 - 55069009
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    ||||||| | ||||||| |||| |||||||| |||| | ||||| |||| |||||||||||||| |||||    
T  55068940 ctcaattgataaaaatgccaaagttgttaggctgaatgccatgatcgggattcgaaccccgatacctcca 55069009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 2861065 - 2861121
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaac 432  Q
    ||||| |||| |||||||| |||||||||||| | ||||||||||||  ||||||||    
T  2861065 ctcaactaacgaaaatgtcgaaattgttaggtcggacgtcatgaccgaagttcgaac 2861121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 11029686 - 11029746
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||||| ||||||||||| || | | ||||||| |||||||||||||| || |||||    
T  11029686 caaaaatgtcgaaattgttaggctggatgccatgaccagggttcgaaccccggtacctcca 11029746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 16135026 - 16135117
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||| | | |||| || |||||||||||||||| || |||| | |||||||| ||||||||| |||  ||||||||    
T  16135026 aaaatgccgaaattgttaggtcggatgtcaagatcggggttcgaaccccgctacctcc-acttatgtgtgtgagtttataatggctttgtcat 16135117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 33096000 - 33096084
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||| | |||||||||||  |||||||||||  ||||||| ||| |||| | ||||| ||| ||||| |||||||| ||||    
T  33096000 caaaaatgacgaaattgttaggccgaacgtcatgattggggttcaaactccgacacctccactttgtgtgtgtgagtttacgatg 33096084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 47570307 - 47570398
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||||||||||| |  | | ||||| | | |||||||||||||| || |||| |||||||||| ||||||||| |||  ||||||||    
T  47570307 aaaatgtcaaaattgttaagccggatgtcataatcagggttcgaaccccggtacctcc-atttatgtgtgtgagtttataatgactttgtcat 47570398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 52256858 - 52256798
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||||| | ||||||||| || | | |||||||||||||||||||||| || |||||    
T  52256858 caaaaatgtcgatattgttaggctggatgccatgaccggggttcgaaccccggtacctcca 52256798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 22999098 - 22999193
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| ||||||||||||   | ||||||||||||||||||||||||||| | ||||| ||| ||||| ||||||||||||| |||||||||||    
T  22999098 aaaaatgccaaaattgttagtccggacgtcatgaccggggttcgaaccccgacacctccactttgtgtgtgtgagtttatgatggttttgtcatct 22999193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 32517923 - 32517840
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||| ||||||||||| || |||||||||||| ||||||||||||| || ||||| ||| ||||| |||||||||||||    
T  32517923 aaaaatgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtgagtttatgatg 32517840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 22382413 - 22382343
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| ||||||||||||||||| | ||||| ||| ||| | ||||||||||||| |||||||||||    
T  22382413 acgtcatgatcggggttcgaaccccgacacctccactttgtgtatgtgagtttatgatggttttgtcatct 22382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 22914439 - 22914369
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| ||||||||||||||||| | ||||| ||| ||| | ||||||||||||| |||||||||||    
T  22914439 acgtcatgatcggggttcgaaccccgacacctccactttgtgtatgtgagtttatgatggttttgtcatct 22914369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 39417476 - 39417548
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||  | | |||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  39417476 aaattgttaggccggatgtcatgac-ggggttcgaactccgatatctccactttatgtgtgtgagtttatgatg 39417548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 44765248 - 44765300
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgata 439  Q
    |||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  44765248 aaaatgtcgaaattgttaggttggatgtcatgatcggggttcgaaccccgata 44765300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 816372 - 816464
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||| ||||||||||||||    ||||||||||  ||||||||||||| ||  |||| ||| ||||| ||||||||||||| ||||| |||||    
T  816372 caaaaatgccaaaattgttaggt----cgtcatgaccatggttcgaaccccggtacatccactttgtgtgtgtgagtttatgatggttttgccatct 816464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 18741503 - 18741408
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| | |||||||||||| |||| |||||| || ||||| ||| ||| || ||||| ||| ||||| |||||||||||||  ||||||||||    
T  18741503 aaaaatgccgaaattgttaggtcgaacatcatgatcgaggttcaaactccggtacctccactttgtgtgtgtgagtttatgatgactttgtcatct 18741408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 468
Target Start/End: Complemental strand, 25219947 - 25219866
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgat 468  Q
    ||||||| | |||||||||||| | ||||||||| |||||||| || ||||||| ||||| ||||||||| ||| ||||||||    
T  25219947 aaaaatgccgaaattgttaggtcggacgtcatga-cggggttcaaatcccgatacctccactttatgtgtgtgaatttatgat 25219866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 37103343 - 37103428
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||||| ||||||||||   | || |||||||||||||| ||||||||||| ||||  ||| ||||| ||| |||||||||    
T  37103343 acaaaaatgtcgaaattgttagaccggacatcatgaccggggtttgaaccccgatacctccgttttgtgtgtgtgaatttatgatg 37103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 13491074 - 13491129
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatg 466  Q
    ||||||||||||||||||||||| | ||| ||||| ||| ||||| ||||||||||    
T  13491074 acgtcatgaccggggttcgaacctcaatacctccactttgtgtgtgtgagtttatg 13491129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 479
Target Start/End: Original strand, 18055872 - 18055974
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||  ||||||||||||||||| ||||  | | ||||||| ||||||||||||| || || |||| |||| ||||| ||||||||| |||  ||||    
T  18055872 ctcaattggcaaaaatgtcaaaattgctaggccggatgtcatgatcggggttcgaaccgcgttacctcc-atttgtgtgtgtgagtttataatgactttg 18055970  T
Q  476 tcat 479  Q
    ||||    
T  18055971 tcat 18055974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 18469535 - 18469445
Alignment:
Q  388 aaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||||| |||||||||||  ||||||| ||| ||||||| ||||||||| |||||| |||| | || |||||||||| |||  ||||||||    
T  18469535 aaatgtcgaaattgttaggccgaacgtcttgatcggggtttgaaccccgacatctcc-atttgtatgcatgagtttataatgactttgtcat 18469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 13268079 - 13268021
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  13268079 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 13268021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 436
Target Start/End: Complemental strand, 30854840 - 30854790
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    ||||||||| |||||||||||  ||| ||||||||||||| ||||||||||    
T  30854840 aaaaatgtcgaaattgttaggacgaatgtcatgaccggggctcgaaccccg 30854790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 469
Target Start/End: Complemental strand, 40710915 - 40710857
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||||||||||||||||| || ||||| ||| ||| | || ||||||||||    
T  40710915 acgtcatgaccggggttcgaaccccggtacctccactttgtgtttgtgtgtttatgatg 40710857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 40812041 - 40812118
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || || | | |||||||| |||||||||    
T  40812041 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtaccttc-acttatgtgtgtgagtttat 40812118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 465
Target Start/End: Original strand, 1910814 - 1910902
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    ||||| || ||||||||| |||||| |||||  | | || ||||||||||||||||| ||||||||| |||||| ||||| ||| |||||    
T  1910814 ctcaagtagcaaaaatgttaaaattattaggccggatgttatgaccggggttcgaactccgatatct-caatttgtgtgtgtgaatttat 1910902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 24381269 - 24381318
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    |||||||| ||||||||||| || | | ||||||||||||||||||||||    
T  24381269 aaaatgtcgaaattgttaggctggatgccatgaccggggttcgaaccccg 24381318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 41197015 - 41197063
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagttta 464  Q
    ||||||||||||||||||||||||| || | |||||||||| ||||||||    
T  41197015 catgaccggggttcgaaccccgata-cttccatttatgtgtgtgagttta 41197063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 19954999 - 19954910
Alignment:
Q  390 atgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||| ||||||||| || | | ||||||| ||| ||||||||||||||| ||| | ||  ||||| |||||||||||||  ||||||||||    
T  19954999 atgtcgaaattgttaagtcggatgtcatgatcggagttcgaaccccgatacctctactt--tgtgtgtgagtttatgatgactttgtcatct 19954910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 23957076 - 23957151
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagttt 463  Q
    |||||||| |||||||||||  | | ||||||| |||||||||||||||| || |||| | |||||||| |||||||    
T  23957076 aaaatgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctcc-acttatgtgtgtgagttt 23957151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 33898244 - 33898304
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    |||||||  |||||||||| |||||||||||  | | ||||||||||||||||||| ||||    
T  33898244 ctcaattggcaaaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaatcccg 33898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 43461438 - 43461347
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||| |||||||||||  | | | |||||||||||||||||||||| || |||| | || ||||| ||||||||| |||  ||||||||    
T  43461438 aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc-acttgtgtgtgtgagtttataatgactttgtcat 43461347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 38944487 - 38944391
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| || |||||||||||||| |||||| ||||  |||||||||||| ||| ||||| ||||||| | ||||||||||||| |||||||||||    
T  38944487 caaaaatatcgaaattgttaggttggacgtcaagaccctggttcgaaccccaatacctccactttatgtatgtgagtttatgatggttttgtcatct 38944391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 469
Target Start/End: Complemental strand, 9696407 - 9696314
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||  |||||||||| |||||||||||| |||||| |||| ||||||||||||| || || ||||| ||||||||| | |||||||||||    
T  9696407 ctcaattggcaaaaatgtcgaaattgttaggtcgaacgttatgatcggggttcgaacctcggtacctccactttatgtgtgtaagtttatgatg 9696314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 473
Target Start/End: Complemental strand, 22988098 - 22988009
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttt 473  Q
    ||||||||||| |||||||||||| ||||||||||||  | ||||||||||||||| ||| | ||||||||| |||  ||||||||||||    
T  22988098 acaaaaatgtcgaaattgttaggtcgaacgtcatgactagagttcgaaccccgatacctctactttatgtgtgtgatcttatgatgtttt 22988009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 386 - 481
Target Start/End: Complemental strand, 37340212 - 37340118
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| |||||||||||  ||||||||||| | || |||||||| || |||||||| ||| ||||| ||||||||||||| |||||||||||    
T  37340212 aaaaatgtcgaaattgttaggccgaacgtcatgatcagg-ttcgaaccacggtatctccactttgtgtgtgtgagtttatgatgattttgtcatct 37340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 22717119 - 22717208
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttt 473  Q
    ||||||||||| |||||||||||| |||||||||||   | ||||||||||||||| ||| | ||||||||| |||  ||||||||||||    
T  22717119 acaaaaatgtcgaaattgttaggtcgaacgtcatgattagagttcgaaccccgatacctctactttatgtgtgtgatcttatgatgtttt 22717208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 46343362 - 46343447
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||||||  | ||||||||||||||||||||||||   || ||||| |||| |||| |||||||||||||  ||||||||||    
T  46343362 aaattgttaggccggacgtcatgaccggggttcgaaccctagtacctccattttacgtgtgtgagtttatgatgactttgtcatct 46343447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 481
Target Start/End: Complemental strand, 32057829 - 32057734
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||| ||||||||||||||||| | || ||||||| | | ||||||||| | || ||||| ||| ||||| ||||||||||||| |||||||||||    
T  32057829 caaaattgtcaaaattgttaggtcggacatcatgactgtgattcgaacccgg-tacctccactttgtgtgtgtgagtttatgatggttttgtcatct 32057734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 38814606 - 38814665
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    ||||||| |||| ||||||||||| | | ||||||||||||||||||||||||| |||||    
T  38814606 aaaaatgccaaatttgttaggttggatgccatgaccggggttcgaaccccgatacctcca 38814665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 38882741 - 38882800
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||||||| || |||||    
T  38882741 aaaaatgtcgaaattgttaggctggacgtcatgaccggagttcgaaccccggtacctcca 38882800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 469
Target Start/End: Original strand, 46107416 - 46107499
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||||||||| |||| |   ||||||||| || | |||||||||||||| ||||| ||||||||| ||| |||||||||    
T  46107416 aaaaatgtcaaaattattagatcagacgtcatgatcgagattcgaaccccgatacctccactttatgtgtgtgaatttatgatg 46107499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 468
Target Start/End: Original strand, 48391712 - 48391794
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgat 468  Q
    |||||| |||||||||||||| || |||||||||| ||||||||||||||  || ||| | ||| | ||| ||||||||||||    
T  48391712 aaaaatatcaaaattgttaggctggacgtcatgactggggttcgaaccccagtacctctattttgtatgtgtgagtttatgat 48391794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 13389053 - 13389121
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||||||| | | |||||||||||||||||||||||| || |||| | |||||||| |||||||||    
T  13389053 aaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttat 13389121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 35463911 - 35463842
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgt 455  Q
    ||||||| |||||||||||||||| | |||||||| | ||||||||||||| || ||||| ||| |||||    
T  35463911 aaaaatgccaaaattgttaggttggatgtcatgactgtggttcgaaccccggtacctccactttgtgtgt 35463842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 469
Target Start/End: Original strand, 24870619 - 24870703
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||| | |||||||||||  | |||| ||||||| |||||||||| || || ||||| |||| |||| |||||||||||||    
T  24870619 caaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtgagtttatgatg 24870703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 28758399 - 28758479
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| | ||||| |||||| | ||||||||||||| |||||||||||  || ||||| ||| ||||| |||||||||    
T  28758399 caaaaatgccgaaattattaggtcggacgtcatgaccggagttcgaaccccagtacctccactttgtgtgtgtgagtttat 28758479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 46552949 - 46553036
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||| |||||||||||||  | | |||||||||||||||||||||||| || |||| | |||||||| ||| ||||| ||| |||||    
T  46552949 aaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgaatttataatggttttg 46553036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 13849377 - 13849448
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgt 455  Q
    ||||||||||| ||||||||||||   ||||| ||| ||||||||||||||||| | ||||| ||| |||||    
T  13849377 acaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactttgtgtgt 13849448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 579346 - 579269
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | ||||||| |||||||||||||||| || |||| | |||||||| |||||||||    
T  579346 aaaatgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctcc-acttatgtgtgtgagtttat 579269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 24478557 - 24478463
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||||||| |||||||||| | | |  | |||| |||||||||||| | |||| ||||| ||||| ||| || |||||||||| |||||||||||    
T  24478557 aaaatgtcgaaattgttagatcggatattatgatcggggttcgaactctgatacctccactttatatgtgtgggtttatgatggttttgtcatct 24478463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 24712112 - 24712170
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  24712112 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 24712170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 34660895 - 34660837
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  34660895 aaaatgcctaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 34660837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 37050753 - 37050802
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    ||||||||||||||||||||||||| |||| | |||||||| |||||||||    
T  37050753 catgaccggggttcgaaccccgatagctcc-acttatgtgtgtgagtttat 37050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 13218220 - 13218269
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    |||||||||||||||||||||| | | | ||||| |||||||||||||||    
T  13218220 aaaaatgtcaaaattgttaggtcggatgccatgatcggggttcgaacccc 13218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 3037261 - 3037352
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | ||||| ||||| || | |||||||||||||||||||| |||  | |||| | |||||||| ||||||||| ||| |||||||||    
T  3037261 aaaatgccgaaattattaggctggatgtcatgaccggggttcgaactccggcacctcc-acttatgtgtgtgagtttataatggttttgtcat 3037352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 5880362 - 5880326
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttat 451  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  5880362 catgaccggggttcgaaccccgatacctccactttat 5880326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 6328955 - 6328868
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||| ||||||||||||||   |||||  || ||||||||||||||||| ||||||   |||||||| ||||||||| ||| |||||    
T  6328955 aaaatgccaaaattgttaggtcagacgtctcgatcggggttcgaaccccgacatctcc-gcttatgtgtgtgagtttataatggttttg 6328868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 28983756 - 28983847
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||| | |||||||||| | | | |||||||||||||||||| ||| || |||| | |||||||| ||||||||| |||  ||||||||    
T  28983756 aaaatgtcgacattgttaggtcggatgccatgaccggggttcgaactccggtacctcc-acttatgtgtgtgagtttataatgactttgtcat 28983847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 54086063 - 54086126
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||| ||||||||||||||| ||| ||||| || || ||||||||||||| ||| |||||||||    
T  54086063 catgatcggggttcgaaccccaatacctccactt-atatgtatgagtttataatgattttgtcat 54086126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 22096 - 22200
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    ||||| ||| |||||||||||||||| |||   || |||||||| ||||||||||||||||||| ||||| ||| ||||| |||||||||||||  ||||    
T  22096 ctcaactaataaaaatgtcaaaattgatagccgga-cgtcatgatcggggttcgaaccccgatacctccactttgtgtgtgtgagtttatgatgactttg 22194  T
Q  476 tcatct 481  Q
    ||||||    
T  22195 tcatct 22200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 3899 - 3807
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||| | |||||||||||||| ||||||||| ||||||||||| |||| || || || ||||||||| ||||||||| ||| |||||||||    
T  3899 aaaatgccgaaattgttaggttggacgtcatgatcggggttcgaatcccggtaccttcattttatgtgtgtgagtttataatggttttgtcat 3807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 475
Target Start/End: Complemental strand, 22792216 - 22792126
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||| | |||||||||||| | ||||| |||| |||||||||||||||| | ||||| ||| ||||| ||||||||||||| |||||    
T  22792216 caaaaatgccgaaattgttaggtcggacgtcttgacaggggttcgaaccccgacacctccactttgtgtgtgtgagtttatgatgattttg 22792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 41215315 - 41215245
Alignment:
Q  411 acgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||||||  |||||||||||    
T  41215315 acgtcatgatcggggtttgaaccccgatacctccactttatgtatatgagtttatgatagttttgtcatct 41215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 469
Target Start/End: Original strand, 26526546 - 26526619
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||  |||||||||||||| ||||||||| ||| || ||||| ||||||||| |||||||||||||    
T  26526546 aaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtttatgatg 26526619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 479
Target Start/End: Original strand, 5203573 - 5203668
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatt-tatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||| |||||||||||  | | | ||||||||||||||||||||||||| ||||| || | ||||| ||||||||| |||  ||||||||    
T  5203573 caaaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccccgatacctccacttgtgtgtgtgtgagtttataatgactttgtcat 5203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 10084034 - 10083951
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||||| ||||| ||| || | |||||||||||||||||||||| ||| || ||||| ||| ||||| | |||||||||||    
T  10084034 aaaaatgtcgaaattattaagtcggacgtcatgaccggggttcgaactccggtagctccactttgtgtgtgtaagtttatgatg 10083951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 475
Target Start/End: Original strand, 11408386 - 11408485
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    ||||| || ||||||||||||||||||||| | ||||||||| | ||| ||||||| |||  || || || ||| ||||| ||||||||||||| |||||    
T  11408386 ctcaactagcaaaaatgtcaaaattgttagatcgaacgtcataatcggagttcgaatcccagtaccttcactttgtgtgtgtgagtttatgatggttttg 11408485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 13542908 - 13542858
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccga 437  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  13542908 aaaaatgtcaaaattgttaggttggacgtcatgacc-gggttcgaactccga 13542858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 4430045 - 4429968
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | |||||||||||||||| |||||||||| |||| | |||||||| |||||||||    
T  4430045 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcaaaccccgatacctcc-acttatgtgtgtgagtttat 4429968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 18990629 - 18990583
Alignment:
Q  396 aaattgttaggttgaacgtcatgaccggggttcgaaccccgatatct 442  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||    
T  18990629 aaattgttaagctgaatgtcatgaccggggttcgaaccccgatatct 18990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 26802358 - 26802416
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||||| || |||||    
T  26802358 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctcca 26802416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 26809908 - 26809966
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||||| || |||||    
T  26809908 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctcca 26809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 26824935 - 26824993
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||||| || |||||    
T  26824935 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctcca 26824993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 6525892 - 6525957
Alignment:
Q  416 atgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    |||| ||||||||||||||| ||| ||||| ||| ||||| |||||||||||||  ||||||||||    
T  6525892 atgatcggggttcgaaccccaatacctccactttgtgtgtgtgagtttatgatgactttgtcatct 6525957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 43237832 - 43237924
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||||||||||||| | || ||||||||||| |||| |||||||| || ||| | ||| | ||| ||||||||| |||| ||||||||    
T  43237832 aaaaatgtcaaaattgttagctgga-cgtcatgaccgaggtttgaaccccggtacctctactttgtatgtgtgagtttatcatgtctttgtcat 43237924  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 433
Target Start/End: Original strand, 9955146 - 9955189
Alignment:
Q  390 atgtcaaaattgttaggttgaacgtcatgaccggggttcgaacc 433  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||    
T  9955146 atgtcaaaattgttaggctgaacgttatgatcggggttcgaacc 9955189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 42436352 - 42436423
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtat 457  Q
    ||||||||| |||||||||| | | | || ||||| ||| |||||||||||| ||||||| |||||||||||    
T  42436352 aaaaatgtcgaaattgttagatcggatgttatgacggggattcgaaccccgacatctccattttatgtgtat 42436423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 671163 - 671105
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | ||||||| ||||||||||||||||||| |||||    
T  671163 aaaatgccgaaattgttaggtcggatgtcatgatcggggttcgaaccccgatacctcca 671105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 1287339 - 1287397
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  1287339 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 1287397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Complemental strand, 4874349 - 4874272
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | || |||| ||||||||||||||||||| |||| |||||||| | |||||||||    
T  4874349 aaaatgtcgaaattgttaggacggatgttatgatcggggttcgaaccccgatacctcc-atttatgtatgtgagtttat 4874272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 6053155 - 6053097
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  6053155 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 6053097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 11462783 - 11462829
Alignment:
Q  409 gaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgt 455  Q
    |||||||||||| |||||||||||||||||| || || |||||||||    
T  11462783 gaacgtcatgactggggttcgaaccccgataccttcactttatgtgt 11462829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 16371576 - 16371518
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| ||||||||||||| || | ||||||| |||||||||||||||| || |||||    
T  16371576 aaaatgccaaaattgttaggctggatgtcatgatcggggttcgaaccccggtacctcca 16371518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 29214883 - 29214929
Alignment:
Q  376 ctcaattaacaaaaatgtcaaaattgttaggttgaacgtcatgaccg 422  Q
    ||||||| | |||||||||||||||||| ||||| ||||||||||||    
T  29214883 ctcaattgataaaaatgtcaaaattgttcggttgtacgtcatgaccg 29214929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 33028254 - 33028331
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||| |||||||||||||  | | |||||||||||||||||||||||| || || | | |||||||| |||||||||    
T  33028254 aaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggta-cttccacttatgtgtgtgagtttat 33028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 465
Target Start/End: Original strand, 36259821 - 36259898
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| |||||||||||  | | ||||||||||||||||||| |||| || |||| | |||||||| |||||||||    
T  36259821 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaatcccggtacctcc-acttatgtgtgtgagtttat 36259898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 1271150 - 1271215
Alignment:
Q  416 atgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatct 481  Q
    ||||||| |||||||| ||| ||| ||||| ||||| ||| ||||||||||||  |||||||||||    
T  1271150 atgaccgaggttcgaatcccaatacctccattttatatgtgtgagtttatgattgttttgtcatct 1271215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 14570549 - 14570500
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccc 434  Q
    |||||||||  |||||||||||||| | ||||| ||||||||||||||||    
T  14570549 caaaaatgttgaaattgttaggttgtatgtcatcaccggggttcgaaccc 14570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 38682952 - 38683001
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccg 436  Q
    |||||| ||||||||||||| || | | ||||||||||||||||||||||    
T  38682952 aaaatgccaaaattgttaggctggatgccatgaccggggttcgaaccccg 38683001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 9054047 - 9053984
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    ||||||||||||||||||||||||| |||| | || ||||| ||||||||| |||  ||||||||    
T  9054047 catgaccggggttcgaaccccgatacctcc-acttgtgtgtgtgagtttataatggctttgtcat 9053984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 9068827 - 9068918
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||| |||||||||||| | | | ||||| |||||||||||||||| || |||| |||  ||||| ||||||||| |||  ||||||||    
T  9068827 aaaatgtcgaaattgttaggtcggatgccatgatcggggttcgaaccccggtacctcc-attagtgtgtgtgagtttataatgactttgtcat 9068918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 17080489 - 17080580
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||| ||||||||| || | | |||||||| |||||||||||| || || |||| | |||||||| ||| ||||| ||| |||||||||    
T  17080489 aaaatgtcgaaattgttaagtcggatgtcatgacgggggttcgaacctcggtacctcc-acttatgtgtgtgaatttataatgattttgtcat 17080580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 19867385 - 19867337
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    |||||| | ||||||||||| |  |||||||||||||||||||||||||    
T  19867385 aaaatgccgaaattgttaggcttcacgtcatgaccggggttcgaacccc 19867337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 34856603 - 34856682
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttat 465  Q
    |||||||| | |||||||||||  | | | |||||||||||||||||||||| || |||| | |||||||| |||||||||    
T  34856603 caaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc-acttatgtgtgtgagtttat 34856682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 480
Target Start/End: Original strand, 22942 - 23037
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcatc 480  Q
    |||||||| | |||||||||||  | |||||||||| | || |||||||||| || ||||| ||| ||||| ||||||||||||| ||||||||||    
T  22942 caaaaatgccgaaattgttaggccggacgtcatgactgaggatcgaaccccggtacctccactttgtgtgtttgagtttatgatggttttgtcatc 23037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 2747571 - 2747656
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    |||||||||||||||||||||||   |||||||||| |||| |||||| || ||||  |||| ||||||||| |||||||| ||||    
T  2747571 acaaaaatgtcaaaattgttaggccaaacgtcatgatcgggattcgaatcctgatacttccattttatgtgtgtgagtttacgatg 2747656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 29183710 - 29183769
Alignment:
Q  415 catgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||||||||||||||||||||||||| | || ||||| ||||||||| ||| |||||    
T  29183710 catgaccggggttcgaaccccgatatctcc-acttgtgtgtgtgagtttattatggttttg 29183769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 15095280 - 15095209
Alignment:
Q  384 acaaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgt 455  Q
    ||||||||| | |||||||||| |||| |||||||| ||   ||||||||| |||| |||||||||||||||    
T  15095280 acaaaaatgccgaaattgttagattgatcgtcatgatcgaaattcgaaccctgatacctccaatttatgtgt 15095209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 2301483 - 2301425
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| |||||||||||||| | | ||||| |||||||||||||||||| || |||||    
T  2301483 aaaatgccaaaattgttaggtcggatgtcataaccggggttcgaaccccggtacctcca 2301425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 8939650 - 8939708
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||||| | | |||||||||||||||||||||||| || |||||    
T  8939650 aaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcca 8939708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 475
Target Start/End: Original strand, 8977177 - 8977266
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttg 475  Q
    |||||||| | |||||||||||  | | ||||||| |||||||||||||||| || |||| |||| ||||| ||||||||| ||| |||||    
T  8977177 caaaaatgcccaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctcc-atttgtgtgtgtgagtttataatggttttg 8977266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 29479453 - 29479511
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||||| ||||||||||| || | ||||| |||||| |||||||||||||| |||||    
T  29479453 aaaatgtcgaaattgttaggctggatgtcataaccgggattcgaaccccgatacctcca 29479511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 31057882 - 31057947
Alignment:
Q  413 gtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgtttttgtcat 479  Q
    |||||||||||||||||||||||| || |||| | || ||||| ||||||||| ||| |||||||||    
T  31057882 gtcatgaccggggttcgaaccccggtacctcc-acttgtgtgtgtgagtttataatggttttgtcat 31057947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 469
Target Start/End: Complemental strand, 31242093 - 31242014
Alignment:
Q  388 aaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatg 469  Q
    ||||||| |||||||||||  | ||||||||||||||||||||| ||||| | |||||   | ||||| |||||||||||||    
T  31242093 aaatgtcgaaattgttaggccggacgtcatgaccggggttcgaatcccgacacctcca--ctgtgtgtgtgagtttatgatg 31242014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 32389580 - 32389613
Alignment:
Q  386 aaaaatgtcaaaattgttaggttgaacgtcatga 419  Q
    |||||| |||||||||||||||||||||||||||    
T  32389580 aaaaatatcaaaattgttaggttgaacgtcatga 32389613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 17546060 - 17546116
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctc 443  Q
    |||||||| |||||||||||| | | ||||||| ||| ||| |||||||||||||||    
T  17546060 aaaatgtcgaaattgttaggtcggatgtcatgatcggagtttgaaccccgatatctc 17546116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 411672 - 411720
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaacccc 435  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||    
T  411672 aaaatgtcaaaattgttaggtcggatgtcatgaccggggttcgaacccc 411720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1112 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1112
Description:

Target: scaffold1112; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 1409 - 1504
Alignment:
Q  134 tttcaaaagagtcactctccaatgaatttaaaatgaaaacgatttatatatttaacgtttttatcaaatggcatcttaaataactagccaaacaagag 231  Q
    ||||||||||| || || ||||| |||  ||| |||  |||||||||||||  ||| |||||||||||||| ||||||||||| |||||||| |||||    
T  1409 tttcaaaagaggcagtccccaattaatgcaaactgatcacgatttatatat--aacatttttatcaaatggaatcttaaataattagccaaaaaagag 1504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 19419 - 19332
Alignment:
Q  385 caaaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctccaatttatgtgtatgagtttatgatgttttt 474  Q
    |||||||||  |||||||||||  | |||||||||  |||||||||||||||||| ||||| ||| ||||||  ||||||||||| ||||    
T  19419 caaaaatgttgaaattgttaggccggacgtcatgattggggttcgaaccccgatacctccattttgtgtgta--agtttatgatgatttt 19332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 7861 - 7803
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctcca 445  Q
    |||||| | |||||||||| | | | ||||||||||||||||||||||||||| |||||    
T  7861 aaaatgccgaaattgttagatcggatgtcatgaccggggttcgaaccccgatacctcca 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 42076 - 42132
Alignment:
Q  387 aaaatgtcaaaattgttaggttgaacgtcatgaccggggttcgaaccccgatatctc 443  Q
    |||||| |||||||||||||  | ||| ||||| |||||||||||||||| ||||||    
T  42076 aaaatgccaaaattgttaggccggacgccatgatcggggttcgaaccccggtatctc 42132  T

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