View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-18 (Length: 440)

Name: NF2640-Insertion-18
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-18
NF2640-Insertion-18
[»] chr3 (25 HSPs)
chr3 (7-440)||(18026053-18026497)
chr3 (269-440)||(27392092-27392263)
chr3 (278-440)||(12146248-12146413)
chr3 (278-435)||(27347643-27347800)
chr3 (8-110)||(27865002-27865103)
chr3 (7-110)||(3171520-3171623)
chr3 (310-440)||(27376431-27376564)
chr3 (8-109)||(24107354-24107455)
chr3 (8-106)||(19860526-19860623)
chr3 (8-110)||(38758639-38758741)
chr3 (8-110)||(54446051-54446153)
chr3 (58-107)||(21792251-21792300)
chr3 (57-110)||(27864830-27864883)
chr3 (353-440)||(17746113-17746200)
chr3 (353-440)||(19047433-19047520)
chr3 (67-110)||(31596749-31596792)
chr3 (61-110)||(24107182-24107231)
chr3 (324-396)||(26142185-26142257)
chr3 (8-110)||(46684129-46684230)
chr3 (58-110)||(38758860-38758912)
chr3 (71-110)||(16907961-16908000)
chr3 (132-184)||(27376730-27376784)
chr3 (8-106)||(46685469-46685566)
chr3 (70-103)||(14812465-14812498)
chr3 (132-184)||(12146543-12146595)
[»] scaffold0043 (1 HSPs)
scaffold0043 (278-440)||(54589-54754)
[»] chr5 (13 HSPs)
chr5 (8-110)||(23322129-23322231)
chr5 (8-110)||(5840908-5841010)
chr5 (8-110)||(15933387-15933489)
chr5 (8-106)||(25088993-25089091)
chr5 (8-106)||(25146962-25147060)
chr5 (57-110)||(23322350-23322403)
chr5 (55-110)||(43183261-43183316)
chr5 (57-110)||(25088435-25088488)
chr5 (57-110)||(25146404-25146457)
chr5 (70-110)||(5841142-5841182)
chr5 (70-110)||(34634099-34634139)
chr5 (57-110)||(9379961-9380014)
chr5 (57-110)||(9380705-9380758)
[»] chr4 (26 HSPs)
chr4 (8-110)||(49028294-49028396)
chr4 (8-110)||(10286441-10286543)
chr4 (7-110)||(36098776-36098879)
chr4 (8-110)||(10468511-10468613)
chr4 (8-110)||(21038317-21038417)
chr4 (7-110)||(52677754-52677857)
chr4 (8-110)||(16067527-16067629)
chr4 (57-109)||(3990927-3990979)
chr4 (8-110)||(12585189-12585291)
chr4 (60-110)||(10468735-10468785)
chr4 (60-110)||(52677583-52677633)
chr4 (57-106)||(9268058-9268107)
chr4 (57-110)||(9450910-9450963)
chr4 (70-110)||(4437711-4437751)
chr4 (70-110)||(21325695-21325735)
chr4 (70-110)||(45667262-45667302)
chr4 (8-110)||(622260-622362)
chr4 (57-110)||(12585410-12585463)
chr4 (61-110)||(16067355-16067404)
chr4 (57-106)||(17931323-17931372)
chr4 (57-106)||(49028515-49028564)
chr4 (70-110)||(4439038-4439078)
chr4 (70-110)||(9449746-9449786)
chr4 (70-110)||(10202709-10202749)
chr4 (70-110)||(25225821-25225861)
chr4 (70-110)||(28450781-28450821)
[»] chr8 (5 HSPs)
chr8 (8-110)||(30905929-30906031)
chr8 (8-110)||(18202804-18202906)
chr8 (57-110)||(10536031-10536084)
chr8 (70-110)||(10536792-10536832)
chr8 (70-110)||(32539450-32539490)
[»] chr2 (10 HSPs)
chr2 (8-110)||(38694919-38695021)
chr2 (313-440)||(22391353-22391483)
chr2 (8-110)||(18171283-18171385)
chr2 (8-110)||(42962971-42963073)
chr2 (57-110)||(4733335-4733388)
chr2 (57-110)||(14159237-14159290)
chr2 (57-110)||(14160408-14160461)
chr2 (57-110)||(18166664-18166717)
chr2 (57-106)||(38695140-38695189)
chr2 (57-110)||(4734204-4734257)
[»] chr6 (7 HSPs)
chr6 (8-105)||(5367451-5367548)
chr6 (8-106)||(3658987-3659085)
chr6 (7-110)||(28944276-28944379)
chr6 (57-110)||(5367667-5367720)
chr6 (8-110)||(8286819-8286920)
chr6 (8-110)||(8287369-8287470)
chr6 (57-110)||(3659204-3659256)
[»] scaffold0006 (2 HSPs)
scaffold0006 (7-110)||(93833-93936)
scaffold0006 (57-110)||(93662-93715)
[»] chr7 (6 HSPs)
chr7 (8-106)||(4265011-4265109)
chr7 (71-110)||(25749396-25749435)
chr7 (8-110)||(8905842-8905944)
chr7 (60-109)||(4265231-4265280)
chr7 (70-110)||(8329046-8329086)
chr7 (70-110)||(8905671-8905711)
[»] scaffold0069 (2 HSPs)
scaffold0069 (18-110)||(20112-20204)
scaffold0069 (57-110)||(19926-19979)
[»] scaffold0008 (2 HSPs)
scaffold0008 (8-110)||(266652-266753)
scaffold0008 (57-110)||(266872-266925)
[»] chr1 (6 HSPs)
chr1 (57-110)||(9114850-9114903)
chr1 (8-65)||(30335131-30335188)
chr1 (70-110)||(14903837-14903877)
chr1 (8-63)||(37499250-37499305)
chr1 (72-110)||(9116064-9116102)
chr1 (57-110)||(14904583-14904636)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 18026053 - 18026497
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  18026053 attaacggttttgacggtggagatttatttgattgacagaagatggcttaaagggactaaatggtaacgttaataacttatgggactaaaatgtaaccaa 18026152  T
Q  107 caaag----------taattaagccaaaagggtttaatgtagagatgaattttaaaagaaaacatccataaatctagtccttggtatgnnnnnnnnn-gt 195  Q
    ||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  18026153 caaataacttatctttaattaagccaaaagggtttaatgtagagatgaattttaaaagaaaacatccataaatctagtccttggtatgttttttttttgt 18026252  T
Q  196 aaatattactgtatgacagtgtgtacctggcaaaaattcccaaataagatagccaagtacgtcatattctctcattgctgatgtcagagagagttcttga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026253 aaatattactgtatgacagtgtgtacctggcaaaaattcccaaataagagagccaagtacgtcatattctctcattgctgatgtcagagagagttcttga 18026352  T
Q  296 caacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18026353 caacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaa 18026452  T
Q  396 tattgacttcctgatcaacttcacatacaaatatttcctctagct 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18026453 tattgacttcctgatcaacttcacatacaaatatttcctctagct 18026497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 269 - 440
Target Start/End: Original strand, 27392092 - 27392263
Alignment:
Q  269 attgctgatgtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttga 368  Q
    |||||||| ||||||||||||||| |||||| | ||||| |||||| | || |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  27392092 attgctgaagtcagagagagttctcgacaactttgtataaaacgatatggtgctgcttgaaaatgaattccttgggtctggctgaggcttggtaggttga 27392191  T
Q  369 gaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagct 440  Q
     |||||||||| || ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||    
T  27392192 caaatgctacaaatttcagatttggaatattgactttctcatcaacttcgcatacaaatatttcctctagct 27392263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 440
Target Start/End: Complemental strand, 12146413 - 12146248
Alignment:
Q  278 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 377  Q
    |||||||||||||||||||||  | | |||  |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||||    
T  12146413 gtcagagagagttcttgacaattttggataatacgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgcta 12146314  T
Q  378 catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagct 440  Q
    || ||  ||| |||||||||||||||| || ||||    |||||||||||||||||||||||||||    
T  12146313 caaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagct 12146248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 435
Target Start/End: Complemental strand, 27347800 - 27347643
Alignment:
Q  278 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 377  Q
    |||||||||||||||||||||  | | | |  |||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||| |||||||     
T  27347800 gtcagagagagttcttgacaattttggacaatacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttgacaaatgctg 27347701  T
Q  378 catatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctc 435  Q
    || || |||| |||||||||||||||| || |||| ||| ||||||||||||||||||    
T  27347700 caaatttcagttttggaatattgactttctcatcacctttacatacaaatatttcctc 27347643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 27865002 - 27865103
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||| |||||||||| ||||  ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||    
T  27865002 ttaacggttttgacggtggggatttatttggttgacggaagatgacttaaagg-accaaattgtaacgttaataacttatgggactaaaatgtaaccaac 27865100  T
Q  108 aaa 110  Q
    |||    
T  27865101 aaa 27865103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 3171623 - 3171520
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||||||||||||| ||| |||||| ||||  ||||||  ||||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  3171623 attaacggttttgacggtggggatgtatttggttgacggaagataacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaa 3171524  T
Q  107 caaa 110  Q
    ||||    
T  3171523 caaa 3171520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 310 - 440
Target Start/End: Complemental strand, 27376564 - 27376431
Alignment:
Q  310 acgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctga 409  Q
    |||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||| ||||||||||  | | |||||||| |||||||||| || |    
T  27376564 acgattttgtacagcctgaaaatgaattccttgagtctggcagagacttggtaggttgacaaatgctacaagttttagatttggcatattgactttctca 27376465  T
Q  410 tca---acttcacatacaaatatttcctctagct 440  Q
    |||    |||||||||||||||||||||||||||    
T  27376464 tcaccttcttcacatacaaatatttcctctagct 27376431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 24107354 - 24107455
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||  ||||||||| || |  ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  24107354 ttaacggttttgacggtgggaatttatttggttaacggaagatgacttaacgggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaac 24107453  T
Q  108 aa 109  Q
    ||    
T  24107454 aa 24107455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 19860623 - 19860526
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||||||||||||||| ||||||| ||||  ||||||  |||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  19860623 ttaacggttttgacggtggagaattatttggttgacggaagatcacttaaagg-accaaattgtaacgttaataacttatgggactaaaatgtaaccaa 19860526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 38758741 - 38758639
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||| ||||| ||||||||| | ||  ||||||  ||||||||||| | || ||||||||||||||||||||||||||||||||||||||    
T  38758741 ttaacggttttgacagtggaaatttatttggtagagggaagataacttaaagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaac 38758642  T
Q  108 aaa 110  Q
    |||    
T  38758641 aaa 38758639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 54446153 - 54446051
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||   ||||||||| ||||  ||||||| ||||||||||||| || |||||||||||||||||| ||| |||||||||| ||||    
T  54446153 ttaacggttttgacggtgagaatttatttgtttgacggaagatgacttaaagggaccaaattgtaacgttaataacttataggattaaaatgtaatcaac 54446054  T
Q  108 aaa 110  Q
    |||    
T  54446053 aaa 54446051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 21792300 - 21792251
Alignment:
Q  58 agggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21792300 agggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaac 21792251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 27864883 - 27864830
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  27864883 aagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaa 27864830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 17746113 - 17746200
Alignment:
Q  353 aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagct 440  Q
    |||||||||||||||| |||||| |||  | |||| || ||||||||||||| || |||| |||||| | ||||||||||||||||||    
T  17746113 aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagct 17746200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 440
Target Start/End: Original strand, 19047433 - 19047520
Alignment:
Q  353 aggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatcaacttcacatacaaatatttcctctagct 440  Q
    |||||||||||||||| |||||| |||  | |||| || ||||||||||||| || |||| |||||| | ||||||||||||||||||    
T  19047433 aggcttggtaggttgacaaatgccacaactttcagtttcggaatattgactttctcatcaccttcacttccaaatatttcctctagct 19047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 31596749 - 31596792
Alignment:
Q  67 atggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  31596749 atggtaacgttaataacttatgggaccaaaatgtaaccaacaaa 31596792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 24107231 - 24107182
Alignment:
Q  61 gaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  24107231 gaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaa 24107182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 26142185 - 26142257
Alignment:
Q  324 cctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaat 396  Q
    |||||||||||||||  ||||  |||| ||| ||||||||||||| ||||||||||  |||||||||||||||    
T  26142185 cctgaaaatgaattccctgggcatggcagagccttggtaggttgacaaatgctacaactctcagatttggaat 26142257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 46684230 - 46684129
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||| ||| ||||||||| ||||||||||  |||  ||||||  ||||| ||||||| |  |||| |||||||||||||||||  ||||||||||||||    
T  46684230 ttaacagttctgacggtggcgatttatttggctgacggaagataacttaa-gggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaac 46684132  T
Q  108 aaa 110  Q
    |||    
T  46684131 aaa 46684129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 38758860 - 38758912
Alignment:
Q  58 agggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||||| ||  ||||||| |||||||||||||| |||||||||||||||||    
T  38758860 agggaccaaattataacgttgataacttatgggaccaaaatgtaaccaacaaa 38758912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 16908000 - 16907961
Alignment:
Q  71 taacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  16908000 taacgttaataacttatgggaccaaaacgtaaccaacaaa 16907961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 27376784 - 27376730
Alignment:
Q  132 aatgtagagatgaattttaaaag--aaaacatccataaatctagtccttggtatg 184  Q
    ||||||||||| |||||||||||  |||| ||||||||||||| |||||||||||    
T  27376784 aatgtagagattaattttaaaagaaaaaaaatccataaatctactccttggtatg 27376730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 46685469 - 46685566
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||| |||||||  |||||||||| ||||  ||||||  ||||| ||||| | |  |||| | |||||||||||||||| |||||||||||||    
T  46685469 ttaacggtttcgacggtgtggatttatttggttgacggaagataacttaa-gggactataacgtaatgataataacttatgggaccaaaatgtaaccaa 46685566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 14812498 - 14812465
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaac 103  Q
    ||||||||||||||||||||||| ||||||||||    
T  14812498 gtaacgttaataacttatgggaccaaaatgtaac 14812465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 12146595 - 12146543
Alignment:
Q  132 aatgtagagatgaattttaaaagaaaacatccataaatctagtccttggtatg 184  Q
    |||||||| || ||||||||||||||| |||||| |||||| ||||| |||||    
T  12146595 aatgtagatattaattttaaaagaaaaaatccattaatctactccttagtatg 12146543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 440
Target Start/End: Original strand, 54589 - 54754
Alignment:
Q  278 gtcagagagagttcttgacaacgtagtatagaacgattttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgcta 377  Q
    |||||||||||||||||||||  | | | | ||||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||  ||||||||    
T  54589 gtcagagagagttcttgacaattttggacaaaacgattttgtacagcctgaaaatgaattccttgggtctggtagaggcttggaaggttggtaaatgcta 54688  T
Q  378 catatctcagatttggaatattgacttcctgatca---acttcacatacaaatatttcctctagct 440  Q
    ||  | |||||||||||| |||||||| |||||||    |||||||||||||||||||||||||||    
T  54689 caactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagct 54754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 23322231 - 23322129
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  23322231 ttaacggttttgacggtggagatttatttgcttgacggaagatgacttaaagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaac 23322132  T
Q  108 aaa 110  Q
    |||    
T  23322131 aaa 23322129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 5841010 - 5840908
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||| |||||||||| ||||  ||||||| |||||||||| || || |||||||||||||||||||| |||||||| ||||||||    
T  5841010 ttaacggttttgacggtggggatttatttggttgacggaagatgacttaaagggatcaaattgtaacgttaataacttatggcactaaaatataaccaac 5840911  T
Q  108 aaa 110  Q
    |||    
T  5840910 aaa 5840908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 15933489 - 15933387
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||| |||||||||| ||||  |||||| |||||||||||| | || ||||||||||||||||||| ||||||||| ||||||||    
T  15933489 ttaacggttttgacggtggggatttatttggttgacggaagatagcttaaagggactaaattgtaacgttaataacttatgagactaaaatataaccaac 15933390  T
Q  108 aaa 110  Q
    |||    
T  15933389 aaa 15933387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 25088993 - 25089091
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||| || || ||| | |||||||||||||  |||||||| |||||||    
T  25088993 ttaaccgttttgacggtggaaatttatttggttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaa 25089091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 25146962 - 25147060
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||| || || ||| | |||||||||||||  |||||||| |||||||    
T  25146962 ttaaccgttttgacggtggaaatttatttggttgatagaagatgacttaaagggatcaaattgtagcattaataacttatgacactaaaatataaccaa 25147060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 23322350 - 23322403
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || |||||||||||||||||||| || |||||||||||||||||    
T  23322350 aagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaa 23322403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 43183316 - 43183261
Alignment:
Q  55 taaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||| || |||| |||||||| ||||||||| |||||||||||||||||    
T  43183316 taaagggaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaa 43183261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 25088488 - 25088435
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || ||||||||||||| ||||| ||| |||||||||||||||||    
T  25088488 aagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaa 25088435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 25146457 - 25146404
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || ||||||||||||| ||||| ||| |||||||||||||||||    
T  25146457 aagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaa 25146404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 5841142 - 5841182
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  5841142 gtaacgttaataatttatgggaccaaaatgtaaccaacaaa 5841182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 34634139 - 34634099
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  34634139 gtaacgttaataacttatgggaccaaattgtaaccaacaaa 34634099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 9380014 - 9379961
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  |||||||||||||||| ||| || |||||||||||||||||    
T  9380014 aagggaccaaaacgtaacgttaataacttgtggaaccaaaatgtaaccaacaaa 9379961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 9380705 - 9380758
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  ||||| ||||||||||||||||  |||||||||||||||||    
T  9380705 aagggaccaaaacgtaacattaataacttatgggatcaaaatgtaaccaacaaa 9380758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 49028396 - 49028294
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||| |||||||||| ||||  |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  49028396 ttaacggttttgacggtggggatttatttggttgacggaagatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaac 49028297  T
Q  108 aaa 110  Q
    |||    
T  49028296 aaa 49028294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 10286543 - 10286441
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||| | ||||||| ||||  ||||||| |||||||||| || || ||||||||||||||| ||||||||||||||||||||||    
T  10286543 ttaacggttttgacggtggaaaattatttggttgaaggaagatgacttaaagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaac 10286444  T
Q  108 aaa 110  Q
    |||    
T  10286443 aaa 10286441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 36098879 - 36098776
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||||||||||||||||||||||||  ||||  |||||| |||||||||||||| ||  |||||||||||| |||||| |||||||| |||||||    
T  36098879 attaacggttttgacggtggagatttatttagttgacggaagatagcttaaagggaccaaattataacgttaataatttatggaactaaaatataaccaa 36098780  T
Q  107 caaa 110  Q
    ||||    
T  36098779 caaa 36098776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 10468613 - 10468511
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||  ||||||||| ||||  ||||||| ||||||||||||| || |||||||||| ||||||   ||||||||||||||||||    
T  10468613 ttaacggttttgacggtgggaatttatttggttgacggaagatgacttaaagggaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaac 10468514  T
Q  108 aaa 110  Q
    |||    
T  10468513 aaa 10468511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 21038317 - 21038417
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| |||||| |||| | ||  ||||||||||||||||  ||||||||||||||||| |    
T  21038317 ttaacggttttgacggtggagatttatttggttgacggaagatgacttaaatggactaaattataacgttaataactta--ggactaaaatgtaaccagc 21038414  T
Q  108 aaa 110  Q
    |||    
T  21038415 aaa 21038417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 52677754 - 52677857
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||||||||||||   ||||||||| ||||   |||||  ||||||||||||| ||  |||| ||||||||||||| |||||||||||||||||    
T  52677754 attaacggttttgacggtgagaatttatttggttgacgtaagataacttaaagggaccaaattataacattaataacttatgagactaaaatgtaaccaa 52677853  T
Q  107 caaa 110  Q
    ||||    
T  52677854 caaa 52677857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 16067527 - 16067629
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||| |||   ||||||||| ||    ||||||| ||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  16067527 ttaacggttttgacagtgagaatttatttggttagcggaagatgacttaaggggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaac 16067626  T
Q  108 aaa 110  Q
    |||    
T  16067627 aaa 16067629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 3990927 - 3990979
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaa 109  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||    
T  3990927 aagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaa 3990979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 12585291 - 12585189
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||| |||||||| |||  |||||||||  ||||   |||||| |||||||||| || || |||| |||||||||||||| ||||||||||||| ||||    
T  12585291 ttaacagttttgacagtgaggatttattttgttgacgaaagatgacttaaagggatcaaattgtaatgttaataacttatgagactaaaatgtaatcaac 12585192  T
Q  108 aaa 110  Q
    |||    
T  12585191 aaa 12585189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 10468735 - 10468785
Alignment:
Q  60 ggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||| || ||||||||||||||||||| ||| |||||||||||||||||    
T  10468735 ggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaa 10468785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 52677633 - 52677583
Alignment:
Q  60 ggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||| || ||||||||||||||||||||||| ||| |||||||||||||    
T  52677633 ggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaa 52677583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 9268107 - 9268058
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||| || ||||| ||||||||||||||||| |||||||||||||    
T  9268107 aagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaa 9268058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 9450910 - 9450963
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  ||||||||||||||||||||||| |||| ||||||||||||    
T  9450910 aagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaa 9450963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 4437751 - 4437711
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  4437751 gtaacgttaataacttatgggaccaaattgtaaccaacaaa 4437711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 21325695 - 21325735
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  21325695 gtaacgttaataactaatgtgactaaaatgtaaccaacaaa 21325735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 45667302 - 45667262
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  45667302 gtaacgttaataacttatgagaccaaaatgtaaccaacaaa 45667262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 622260 - 622362
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||| ||||| | || |||||||||| |||||  || ||| ||||||  || || || ||||| |||||||| ||| || ||||||||||||||||    
T  622260 ttaacggtgttgacagaggggatttatttggttgatgaaaaatgacttaaaaagatcaaatcgtaacattaataacatataggtctaaaatgtaaccaac 622359  T
Q  108 aaa 110  Q
    |||    
T  622360 aaa 622362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 12585410 - 12585463
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || |||| |||||||||||||| ||  |||||||||||||||||    
T  12585410 aagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaa 12585463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 16067404 - 16067355
Alignment:
Q  61 gaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||| || ||||||||||||| |||| | ||||||||||||||||||||    
T  16067404 gaccaaattgtaacgttaataatttatagaactaaaatgtaaccaacaaa 16067355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 17931372 - 17931323
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||  | ||||||||||||||||||||||| ||| |||||||||    
T  17931372 aagggaccattttgtaacgttaataacttatgggaccaaattgtaaccaa 17931323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 49028515 - 49028564
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||| || ||||| ||||||| ||||||||| |||||||||||||    
T  49028515 aagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaa 49028564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 4439038 - 4439078
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  4439038 gtaacgttaataacttatgagaccaaattgtaaccaacaaa 4439078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 9449786 - 9449746
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||| ||| |||| ||||||||||||    
T  9449786 gtaacgttaataacttatgagaccaaaacgtaaccaacaaa 9449746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 10202749 - 10202709
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||| ||||||||| |||||||||||| ||||    
T  10202749 gtaacgttaataatttatgggaccaaaatgtaaccagcaaa 10202709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 25225861 - 25225821
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||| ||| ||||| |||||||||||    
T  25225861 gtaacgttaataacttatgagaccaaaatataaccaacaaa 25225821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 28450821 - 28450781
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  28450821 gtaacattaataacttatgggatcaaaatgtaaccaacaaa 28450781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 30905929 - 30906031
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||  |||||||||| ||||  ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30905929 ttaacggttttgacggtgatgatttatttggttgacggaagatgacttaaagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaac 30906028  T
Q  108 aaa 110  Q
    |||    
T  30906029 aaa 30906031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 18202906 - 18202804
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||||||||||||| ||||| ||||||  |||||| ||| || || ||||| ||||||||||||| ||| ||||||||| ||||    
T  18202906 ttaacggttttgacggtggagatttatttgcttgatggaagattacttaaaaggatcaaattgtaacattaataacttatgagacgaaaatgtaatcaac 18202807  T
Q  108 aaa 110  Q
    |||    
T  18202806 aaa 18202804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 10536084 - 10536031
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  |||| ||||||| |||||||||| |||||||||||||||||    
T  10536084 aagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaa 10536031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 10536792 - 10536832
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  10536792 gtaacattaataacttatgggatcaaaatgtaaccaacaaa 10536832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 32539450 - 32539490
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  32539450 gtaatgttaataacttatgagattaaaatgtaaccaacaaa 32539490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 38695021 - 38694919
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||||| |||||||||| ||||  ||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38695021 ttaacggttttgacggtggggatttatttggttgacggaaaatagcttaaagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaac 38694922  T
Q  108 aaa 110  Q
    |||    
T  38694921 aaa 38694919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 313 - 440
Target Start/End: Complemental strand, 22391483 - 22391353
Alignment:
Q  313 attttgtactgcctgaaaatgaattctttgggtctggctgaggcttggtaggttgagaaatgctacatatctcagatttggaatattgacttcctgatca 412  Q
    ||||||||| |||||||||||||||  |||||||||   ||||||||||||||||| ||||| ||||  | | |||||||| |||||||||| |||||||    
T  22391483 attttgtacagcctgaaaatgaatttcttgggtctgatagaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatca 22391384  T
Q  413 ---acttcacatacaaatatttcctctagct 440  Q
        |||||||||||||||||||||||||||    
T  22391383 ccttcttcacatacaaatatttcctctagct 22391353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 18171283 - 18171385
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||  ||||||||| ||||  ||||||| ||| || |||||| || ||||  ||||||||||||||||||||||||||||||||    
T  18171283 ttaacggttttgacggtgggaatttatttggttgacggaagatgacttgaaaggaccaaattgtaattttaataacttatgggactaaaatgtaaccaac 18171382  T
Q  108 aaa 110  Q
    |||    
T  18171383 aaa 18171385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 42962971 - 42963073
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||||||  ||||||||  ||||  ||||||| ||| |||| |||| || ||||||||||||||||||| ||||||||||||||||||    
T  42962971 ttaacggttttgacggtgggaatttatttagttgacggaagatgacttgaaggcaccaaattgtaacgttaataacttatgagactaaaatgtaaccaac 42963070  T
Q  108 aaa 110  Q
    |||    
T  42963071 aaa 42963073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 4733388 - 4733335
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  |||| |||||||||||||||||| |||||||||||||||||    
T  4733388 aagggaccaaaacgtaatgttaataacttatgggaccaaaatgtaaccaacaaa 4733335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 14159290 - 14159237
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  ||||||||||||||||||||||| |||| ||||||||||||    
T  14159290 aagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaa 14159237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 14160408 - 14160461
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  ||||||||||||||||||||||| |||| ||||||||||||    
T  14160408 aagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaa 14160461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 18166717 - 18166664
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || ||||||||||||||||||| ||  |||||||||||||||||    
T  18166717 aagggaccaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaa 18166664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 38695140 - 38695189
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||| || ||||||||||||| ||||||||| |||||||||||||    
T  38695140 aagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaa 38695189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 4734204 - 4734257
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  |||||||||||||||||| |||  |||||||||||||||||    
T  4734204 aagggaccaaaacgtaacgttaataacttataggatcaaaatgtaaccaacaaa 4734257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 5367548 - 5367451
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaacca 105  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||| || |||| |||||||||||||| ||||||||||||||||    
T  5367548 ttaacggttttgacggtggagatttatttggttgacagaagatgacttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtaacca 5367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 3659085 - 3658987
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||||| ||||||||||||||| || ||||  ||||||| |||||||||| || || ||||| ||||||||||||||||||||| |||||||||    
T  3659085 ttaacggttttaacggtggagatttatctggttgacggaagatgacttaaagggatcaaattgtaactttaataacttatgggactaaactgtaaccaa 3658987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 28944379 - 28944276
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||||||||||||||||||||||||| ||||   |||||  || ||| | |||| || ||||| ||||||||||| | || ||||||||||||||    
T  28944379 attaacggttttgacggtggagatttatttggttgacgaaagataactgaaaagaaccaaattgtaacattaataacttacgagattaaaatgtaaccaa 28944280  T
Q  107 caaa 110  Q
    ||||    
T  28944279 caaa 28944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 5367667 - 5367720
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || |||||||||||||||||||| || |||||||||||||||||    
T  5367667 aagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaa 5367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 8286920 - 8286819
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||| | ||||||| |||||||||| |||| |||||||  ||||| || || | |  ||||||||||| ||||| ||||| ||||||||||||||    
T  8286920 ttaacggttctaacggtggggatttatttggttgacagaagataacttaa-ggaactaaaatgtaacgttaattacttaagggaccaaaatgtaaccaac 8286822  T
Q  108 aaa 110  Q
    |||    
T  8286821 aaa 8286819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8287369 - 8287470
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||| ||||||||| |||||||||||||| ||||  ||||||  ||| ||||||||| |  |||||||| |  | |||  |||||||||||||||||||    
T  8287369 ttaacagttttgacgatggagatttatttggttgacggaagataactt-aagggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaac 8287467  T
Q  108 aaa 110  Q
    |||    
T  8287468 aaa 8287470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 3659204 - 3659256
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || |||| |||||||||||||||||| |||||||||| ||||||    
T  3659204 aagggaccaaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaa 3659256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 93833 - 93936
Alignment:
Q  7 attaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    |||||||||||||||||||| |||||||||| || |  |||||| ||||||| ||| || || ||||||||||||| |||||||||||||||||||||||    
T  93833 attaacggttttgacggtggggatttatttggttaacggaagatagcttaaaaggatcaaattgtaacgttaataatttatgggactaaaatgtaaccaa 93932  T
Q  107 caaa 110  Q
    ||||    
T  93933 caaa 93936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 93715 - 93662
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||| | || ||||||||||||| ||||||||| |||||||||| ||||||    
T  93715 aagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaa 93662  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 4265109 - 4265011
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaa 106  Q
    ||||||||||||||||||| |||||||||| ||||  ||| || |||||||| ||||| || |||| |||||||||||||| ||||||||||| |||||    
T  4265109 ttaacggttttgacggtggggatttatttggttgacggaaaatagcttaaagagaccaaattgtaatgttaataacttatgagactaaaatgtcaccaa 4265011  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 25749396 - 25749435
Alignment:
Q  71 taacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaa 25749435  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 8905842 - 8905944
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    ||||||||||||||||| |  ||||||||| ||||  ||||||| ||||||| |  || || ||||| ||||||| |||||  | |||||| ||||||||    
T  8905842 ttaacggttttgacggtaggaatttatttggttgacggaagatgacttaaagtggtcaaattgtaaccttaataatttatgaaagtaaaatataaccaac 8905941  T
Q  108 aaa 110  Q
    |||    
T  8905942 aaa 8905944  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 4265231 - 4265280
Alignment:
Q  60 ggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaa 109  Q
    |||||| || ||||||||||||||||||||||  ||||||||||| ||||    
T  4265231 ggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaa 4265280  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 8329046 - 8329086
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    |||||||||||||||| || ||| |||||||||||||||||    
T  8329046 gtaacgttaataacttttgagaccaaaatgtaaccaacaaa 8329086  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 8905711 - 8905671
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  8905711 gtaacattaataacttatgagaccaaaatgtaaccaacaaa 8905671  T

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Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 20112 - 20204
Alignment:
Q  18 tgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |||||||||  ||||| |||||| | |||||||||||| || ||||||||||||| |||||| | |||||| |||||||||||    
T  20112 tgacggtggggatttatttagttgatggaagatagtttaaagggaccaaattgtaacgttaataaattatggaattaaaatataaccaacaaa 20204  T

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Target: scaffold0069; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 19979 - 19926
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| || ||||||||||||||||||| ||| |||||||||||||||||    
T  19979 aagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaa 19926  T

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Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 266753 - 266652
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaac 107  Q
    |||||||||||||||  ||| ||||||||| ||||   |||||   |||||||||||| ||  |||| |||||||||||| |||||||||||||||||||    
T  266753 ttaacggttttgacgtggga-atttatttggttgacgtaagataatttaaagggaccaaattataacattaataacttatcggactaaaatgtaaccaac 266655  T
Q  108 aaa 110  Q
    |||    
T  266654 aaa 266652  T

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Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 266872 - 266925
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| ||  ||| |||||||||||||| ||| |||||||||||||||||    
T  266872 aagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaa 266925  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 9114903 - 9114850
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  ||||||||||||||||||||||| |||||||||||||||||    
T  9114903 aagggaccaaaacgtaacgttaataacttatgggaccaaaatgtaaccaacaaa 9114850  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 30335131 - 30335188
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggacca 65  Q
    |||||||||||||||||||| ||||||||| |||||  |||||| |||||||| ||||    
T  30335131 ttaacggttttgacggtggaaatttatttggttgatcaaagatgacttaaaggaacca 30335188  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 14903877 - 14903837
Alignment:
Q  70 gtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  14903877 gtaacgttaataacttatgggatcaaaatgtaaccaacaaa 14903837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 37499305 - 37499250
Alignment:
Q  8 ttaacggttttgacggtggagatttatttgattgatagaagatggcttaaagggac 63  Q
    |||||||||||||||||| | ||||||||| || | |||||||| |||||||||||    
T  37499305 ttaacggttttgacggtgaaaatttatttggttaacagaagatgacttaaagggac 37499250  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 9116064 - 9116102
Alignment:
Q  72 aacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9116064 aacgttaataacttatgagaccaaaatgtaaccaacaaa 9116102  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 14904583 - 14904636
Alignment:
Q  57 aagggaccacatggtaacgttaataacttatgggactaaaatgtaaccaacaaa 110  Q
    ||||||||| |  |||| ||||||| |||||||||| |||||||||||||||||    
T  14904583 aagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaa 14904636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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