View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-2 (Length: 872)
Name: NF2640-Insertion-2
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 6735009 - 6735568
Alignment:
| Q |
8 |
gtttccggcggcaacaaccagccttttgtttcggccggtaatcttcctggtgggtttacagtccagaagcttatgtttggttctgtgacagtgattgatg |
107 |
Q |
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| T |
6735009 |
gtttccggaggcaacaatcaaccttttgtttcggcgggtaatcttcctggtgggtttacagtccagaagcttatgtttggttctgtgacagtaattgatg |
6735108 |
T |
|
| Q |
108 |
accagttaacagaagaacatgagctagattcttctgtgataggaagagcacaagggttttacttggcaagctcattggatggtactagtaagaccattgt |
207 |
Q |
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| T |
6735109 |
accagttaacagaagagcatgagctggattcttctgtgataggaagagcacaggggttttacttggcaagctcattggatggtactagtaagaccattgt |
6735208 |
T |
|
| Q |
208 |
gcttactgttttggtgcatggggctgagcatcatgatggagctgatgacactataagtctgtttgggattcataggacggcgtcgccagaatctgagata |
307 |
Q |
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| T |
6735209 |
gcttactgttttggtgcatggggctgagcatcatgatggagctgatgacactataagtctgtttgggattcataggacggcgtcgccagaatctgagata |
6735308 |
T |
|
| Q |
308 |
gcagtgattggtgggactgggaagtatgggaatgctagaggatatgctgcaattgagaacctactgaaggaggaccaacacaccacagatggggctgaca |
407 |
Q |
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| T |
6735309 |
gcagtgattggtgggactgggaagtatgagaatgctagaggatatgctgcaattgagaacctactgaaggaggaccaacacaccacagatggggctgaca |
6735408 |
T |
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| Q |
408 |
ccatcttgcatttcagtatctacctcactgagtagagagtactgtgattggtttacatatttgaatttgaagtttgatttgtcttcgctgtctaaaattt |
507 |
Q |
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| T |
6735409 |
ccatcttgcatttcagtatctacctcactgagtagtggctactgtgattggttttcatacttgaatttgaagtttgatttggctttgctgtctaaaattt |
6735508 |
T |
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| Q |
508 |
aaaatttgcaccccttaagttaatgtttgattaatggtacaacactgctcattctgcttc |
567 |
Q |
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| T |
6735509 |
aaaatttgcactccttaagttaatgttcgattaatgaaacaagactgatcattctgcttc |
6735568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 625 - 872
Target Start/End: Original strand, 6735629 - 6735876
Alignment:
| Q |
625 |
ccctcattgctgctacatgctgtaagaacattctgttgtaatacaatattgcacaatcaacattcctcatatattgttatctaagttttgattcgtcatc |
724 |
Q |
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| T |
6735629 |
ccctcattgctgctacatgctgtaagaacattctgttgtaatacaatattgcacaatcaacattcctcatatattgttatctaaattttgattcgtaatc |
6735728 |
T |
|
| Q |
725 |
atttaatttttcttggtaaaatcatagctattataactagcatcatgaaataataaagagaagcagatttcagaaaacaaatataatcacaggatttatt |
824 |
Q |
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| T |
6735729 |
atttaatttttcttggtaaaatcatagcaattataactagcatcatgaaataataaagagaagcagatttcagaaaacaaatataatcacaggatttatt |
6735828 |
T |
|
| Q |
825 |
ctctgatattagaagtaagatttaatatgaatcacaatccgatttcag |
872 |
Q |
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| T |
6735829 |
ctctgatattagaagtaaaatttaatatgaatcacaatccgatttcag |
6735876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 14 - 432
Target Start/End: Complemental strand, 52200027 - 52199609
Alignment:
| Q |
14 |
ggcggcaacaaccagccttttgtttcggccggtaatcttcctggtgggtttacagtccagaagcttatgtttggttctgtgacagtgattgatgaccagt |
113 |
Q |
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||||||||||| ||||| |||||||| || || || ||||| || || || ||||| |||||| | |||||||| |||||||||||||| ||||| |||| |
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| T |
52200027 |
ggcggcaacaatcagccgtttgtttcagcagggaaccttccaggaggattaacagttcagaagttgatgtttgggtctgtgacagtgatcgatgatcagt |
52199928 |
T |
|
| Q |
114 |
taacagaagaacatgagctagattcttctgtgataggaagagcacaagggttttacttggcaagctcattggatggtactagtaagaccattgtgcttac |
213 |
Q |
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| T |
52199927 |
tgactgaagggcacgagctggattcgggcgtggttggaagagcacaagggttctacacggctagctcattggatggtactagtcaaagtgttgtgatgac |
52199828 |
T |
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| Q |
214 |
tgttttggtgcatggggctgagcatcatgatggagctgatgacactataagtctgtttgggattcataggacggcgtcgccagaatctgagatagcagtg |
313 |
Q |
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| T |
52199827 |
ggtgtttctgcatggaggtaatgatcatgatggcgtggatgacagtataagcttgtttggagttcacaggacagcatcgctgaaatctgaagttgcagtg |
52199728 |
T |
|
| Q |
314 |
attggtgggactgggaagtatgggaatgctagaggatatgctgcaattgagaacctactgaaggaggaccaacacaccacagatggggctgacaccatct |
413 |
Q |
| |
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| T |
52199727 |
attggtgggagtggtaagtacgagaatgcaaggggatatgcagctcttgagacactgctgaaagaggatcagcacaccacggatggagtcgacaccatca |
52199628 |
T |
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| Q |
414 |
tgcatttcagtatctacct |
432 |
Q |
| |
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| |||||| ||||||||| |
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| T |
52199627 |
tccatttcgatatctacct |
52199609 |
T |
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