View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-20 (Length: 437)
Name: NF2640-Insertion-20
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-20 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 1934438 - 1934140
Alignment:
| Q |
8 |
gtttaccaaaaatcaaggtaaacaggtggtcgaaagcgaaatatactaccttcacttttgactatcacttttggtggtttaatcccttaatgcgtctggc |
107 |
Q |
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| T |
1934438 |
gtttaccaaaaatcaaggtaaacaggtggtcagaagcgaaatatactaccttcgcttttgactatcacttttgttggtttaatcccttaatgcgtctggc |
1934339 |
T |
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| Q |
108 |
ttgttttagtgcccaacttgnnnnnnnnnnnnnnnncattctgttttctaaggattttgatgtaacttgttattaatgttccagagtcttttccggcact |
207 |
Q |
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| T |
1934338 |
ttgttttagtgcccaacttgttttttgtttttgtttcattctgttttctaaggattttgatgtaac-tgttattaatgttccagagtcttttctggcact |
1934240 |
T |
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| Q |
208 |
ttttgcacttgaaggactttgtgctttgtgttactatttctcattttagtttattcnnnnnnnncattatagtctaaattttttataactaaatagactt |
307 |
Q |
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| T |
1934239 |
ttttgtgcttgaaggactttgtgctttgtgttactatatctcattttagcttattc-aaaaaaacattatagtctaacttttttataactaaatagactt |
1934141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 1934075 - 1934027
Alignment:
| Q |
389 |
gtatcactttagtcctataattaattttggttcatttgagtcccttaag |
437 |
Q |
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| T |
1934075 |
gtatcactttggtgctataattaattttggttcatttgagtcccttaag |
1934027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 35807872 - 35807936
Alignment:
| Q |
34 |
tggtcgaaagcgaaatatactaccttcacttttgactatcacttttggtggtttaatcccttaat |
98 |
Q |
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| T |
35807872 |
tggttgaaagcgaaatatattgccttcgcttttgactaacacttttgatggcttaatcccctaat |
35807936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 13102999 - 13102956
Alignment:
| Q |
44 |
cgaaatatactaccttcacttttgactatcacttttggtggttt |
87 |
Q |
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| T |
13102999 |
cgaaatatactacctttacttttgactatcgtttttggtggttt |
13102956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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