View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-21 (Length: 496)

Name: NF2640-Insertion-21
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-21
NF2640-Insertion-21
[»] chr1 (8 HSPs)
chr1 (412-496)||(18741215-18741299)
chr1 (50-226)||(15929847-15930015)
chr1 (144-230)||(17617461-17617546)
chr1 (63-228)||(15966994-15967158)
chr1 (138-205)||(15182917-15182985)
chr1 (149-230)||(1173999-1174081)
chr1 (126-190)||(24689085-24689149)
chr1 (332-372)||(24689274-24689314)
[»] chr2 (6 HSPs)
chr2 (48-230)||(17882993-17883169)
chr2 (48-199)||(39526834-39526982)
chr2 (48-272)||(29529326-29529548)
chr2 (48-200)||(21690041-21690193)
chr2 (289-373)||(34150595-34150679)
chr2 (176-233)||(19920068-19920124)
[»] chr7 (4 HSPs)
chr7 (138-242)||(23804293-23804396)
chr7 (176-223)||(25706254-25706301)
chr7 (176-222)||(2351098-2351144)
chr7 (182-210)||(5214045-5214073)
[»] chr5 (6 HSPs)
chr5 (181-337)||(25662152-25662310)
chr5 (85-206)||(17041206-17041327)
chr5 (48-160)||(24248339-24248451)
chr5 (52-110)||(17033942-17034000)
chr5 (176-225)||(25367692-25367741)
chr5 (176-212)||(10703085-10703121)
[»] chr6 (6 HSPs)
chr6 (140-243)||(12878069-12878172)
chr6 (175-217)||(13835707-13835749)
chr6 (50-167)||(32854499-32854616)
chr6 (183-217)||(23419083-23419117)
chr6 (185-230)||(23946819-23946864)
chr6 (185-229)||(32930449-32930493)
[»] chr4 (4 HSPs)
chr4 (182-229)||(30624960-30625007)
chr4 (282-323)||(30243088-30243129)
chr4 (180-217)||(13275716-13275753)
chr4 (146-230)||(24042295-24042380)
[»] chr8 (2 HSPs)
chr8 (82-120)||(11222091-11222129)
chr8 (339-373)||(13909740-13909774)
[»] chr3 (1 HSPs)
chr3 (182-210)||(26775194-26775222)


Alignment Details
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 412 - 496
Target Start/End: Complemental strand, 18741299 - 18741215
Alignment:
Q  412 agatgaaatagaagtttttctgtttgtctacaataatgctatagtgttgatattattnnnnnnnntaataagagtttatagtata 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  18741299 agatgaaatagaagtttttctgtttgtctacaataatgctatagtgttgatattattaaaaaaaataataagagtttatagtata 18741215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 226
Target Start/End: Complemental strand, 15930015 - 15929847
Alignment:
Q  50 ttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatgtc 149  Q
    ||||||||||| |||||||||||||||       |||||||| || ||||| |||||| |||||| ||||  | | || | |||||  ||||||||||||    
T  15930015 ttttccttctccgacttgttcttggga-------caaaatttccctaacttgtaatgtattcaaagccttatagaaccataataattttcattccatgtc 15929923  T
Q  150 ttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaa 226  Q
    |||||||||||| ||||| | || |||||| ||| || || | ||||||||| |||||||| ||||||  |||||||    
T  15929922 ttccaaaacttccatgaggtgtcttgtttttcgatttgcacggtttatcaat-aaaagactcaaaacacttatgaaa 15929847  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 17617546 - 17617461
Alignment:
Q  144 catgtcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgt 230  Q
    |||||||||||||||||| ||||||  || || || |||||||||||| ||||||||| |||||||| |||| | ||||||||||||    
T  17617546 catgtcttccaaaacttccatgagacgtcttgcttgccgaattacatggtttatcaat-aaaagactcaaaaaacctatgaaattgt 17617461  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 15966994 - 15967158
Alignment:
Q  63 acttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatgtcttccaaaacttca 162  Q
    |||| ||||||||| ||  |||||||||||| |||||| |||||||| |||| ||      | |||||||  || ||||| |||||||||||||||||||    
T  15966994 actttttcttgggacttgagacaaaattttctcaacttgtaatgtctacaaaacccaattgaaccttgatcttcttcatttcatgtcttccaaaacttca 15967093  T
Q  163 atgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaatt 228  Q
     |||  ||   ||||| |||||||| |||||||||||||||||| ||| |||  ||||||||||||    
T  15967094 ttgaagtacattgtttgccgaattatatgatttatcaataaaaa-actcaaattatctatgaaatt 15967158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 15182985 - 15182917
Alignment:
Q  138 tcattccatgtcttccaaaacttcaatgagatatcgtgtttt-ccgaattacatgatttatcaataaaa 205  Q
    |||||| ||||||||||||||||| ||||| | || |||||| |||||||||||||||| ||| |||||    
T  15182985 tcattcaatgtcttccaaaacttccatgaggtgtcttgttttgccgaattacatgatttttcagtaaaa 15182917  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 1174081 - 1173999
Alignment:
Q  149 cttccaaaacttcaatgagatatcgtgtttt-ccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgt 230  Q
    |||||| |||||| |||||||||  || ||| ||||| |||||||||||| |||||||||||| ||| || ||||||| ||||    
T  1174081 cttccataacttccatgagatattttgctttgccgaagtacatgatttattaataaaaagactcaaagcacctatgaagttgt 1173999  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 24689085 - 24689149
Alignment:
Q  126 ccttgataatcatcattccatgtcttccaaaacttcaatgagatatcgtgttttccgaattacat 190  Q
    ||||||||||| || ||| ||||||| |||||| || ||||| | || |||||||||||||||||    
T  24689085 ccttgataatcttctttctatgtctttcaaaacatccatgaggtgtcttgttttccgaattacat 24689149  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 24689274 - 24689314
Alignment:
Q  332 caaatggctactaaagtgactcaaaaacatactaaaaataa 372  Q
    |||||| |||||||| ||||||||||| |||||||||||||    
T  24689274 caaatgtctactaaactgactcaaaaatatactaaaaataa 24689314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 17883169 - 17882993
Alignment:
Q  48 tgttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccat- 146  Q
    |||||||||||||||||||||||||| ||       || |||||||||||||| |||| |||||||| ||||  | | ||||||||||| || |||| |     
T  17883169 tgttttccttctctgacttgttcttgaga-------cacaattttcccaacttgtaatttcttcaaagccttgtagacccttgataatcttcgttccttc 17883077  T
Q  147 gtcttccaaaa-cttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgt 230  Q
    ||| |  |||| |||| ||||| | || ||||| |||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  17883076 gtcataaaaaaacttctatgaggtttcttgtttgccgaattacatgatttatcaat-aaaagactcaaaacaactatgaaattgt 17882993  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 39526834 - 39526982
Alignment:
Q  48 tgttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatg 147  Q
    ||||||||||||   |||||||||| ||| ||  |||| |||||  |||||||  |||||||||||| ||||| ||| ||||||||||| || |||| |     
T  39526834 tgttttccttct---acttgttcttaggacttgagacataatttctccaacttgcaatgtcttcaaagccttctaaaaccttgataatcttcgttcctta 39526930  T
Q  148 tcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatca 199  Q
    |||||||||||| | ||||| | || |||||||  |||||||||||||||||    
T  39526931 tcttccaaaactaccatgaggtgtcttgttttctaaattacatgatttatca 39526982  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 29529326 - 29529548
Alignment:
Q  48 tgttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatg 147  Q
    ||||||||||||| | |||| ||||| |||||  | || |||| ||| || || ||||||||||||| ||||    | ||||||||||| ||||| ||||    
T  29529326 tgttttccttctccgccttggtcttgtgatttggggcagaattctcc-aatttgtaatgtcttcaaagccttattgaaccttgataatcttcatttcatg 29529424  T
Q  148 tcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgtttaatttatggaacaca 247  Q
    |||||||||||||  ||| | |  | || ||||||||||||||||||| ||||| ||||||||  |||||| ||||||||||| |  |||| |||| | |    
T  29529425 tcttccaaaactttcatgggcttccttgctttccgaattacatgatttttcaat-aaaagactcgaaacatgtatgaaattgtctggtttagggaagaaa 29529523  T
Q  248 cagaattacataactgaaataaaaa 272  Q
    || |||||||| ||| || ||||||    
T  29529524 cataattacatgactcaattaaaaa 29529548  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 21690041 - 21690193
Alignment:
Q  48 tgttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatg 147  Q
    ||||||||||||| ||||||||||||| | ||  || | ||||||| |||||| |||||||||||||||||     | |||||||  || ||||||||||    
T  21690041 tgttttccttctccgacttgttcttggaactttggatagaattttctcaacttataatgtcttcaaatcctaattgaaccttgatcctcttcattccatg 21690140  T
Q  148 tcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaa 200  Q
    |||| ||||||||| ||||| | |  || || ||||||| |||||| ||||||    
T  21690141 tcttacaaaacttccatgaggtgtattgcttgccgaattgcatgatctatcaa 21690193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 34150679 - 34150595
Alignment:
Q  289 ttaaactataaacaacttatctaaaactcctttaaaataacctcaaatggctactaaagtgactcaaaaacatactaaaaataac 373  Q
    |||||| || |||||||| |||||||||||| || ||| ||  ||| || |||| ||| ||||||||||||||||||||||||||    
T  34150679 ttaaaccatgaacaacttttctaaaactcctctataatgactacaattgtctaccaaactgactcaaaaacatactaaaaataac 34150595  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 19920068 - 19920124
Alignment:
Q  176 ttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgttta 233  Q
    |||||||||||||||||||| ||||||| || | | |||||| |||||||||||||||    
T  19920068 ttttccgaattacatgatttttcaataataa-attcaaaacacctatgaaattgttta 19920124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 23804293 - 23804396
Alignment:
Q  138 tcattccatgtcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgtttaattt 237  Q
    ||||||||||||||||||||| |  | ||| |||| ||||| |||||||||||||||| ||| | |||||||| ||||||  ||||||||||||| ||||    
T  23804293 tcattccatgtcttccaaaaccttcacgaggtatcttgtttgccgaattacatgatttttcact-aaaagactcaaaacacttatgaaattgtttgattt 23804391  T
Q  238 atgga 242  Q
    |||||    
T  23804392 atgga 23804396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 25706301 - 25706254
Alignment:
Q  176 ttttccgaattacatgatttatcaataaaaagacttaaaacatctatg 223  Q
    |||||||||||||| |||||| ||| |||||||||||||||| |||||    
T  25706301 ttttccgaattacaagatttagcaacaaaaagacttaaaacacctatg 25706254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 2351144 - 2351098
Alignment:
Q  176 ttttccgaattacatgatttatcaataaaaagacttaaaacatctat 222  Q
    ||||| |||||||| ||||||||||||||||||||||| ||| ||||    
T  2351144 ttttctgaattacacgatttatcaataaaaagacttaagacacctat 2351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 5214045 - 5214073
Alignment:
Q  182 gaattacatgatttatcaataaaaagact 210  Q
    |||||||||||||||||||||||||||||    
T  5214045 gaattacatgatttatcaataaaaagact 5214073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 25662152 - 25662310
Alignment:
Q  181 cgaattacatgatttatcaa-taaaaagacttaaaacatctatgaaattgtttaatttatggaacacacagaattaca-taactgaaataaaaataacac 278  Q
    |||||||||||||||||||| |||||||||| |||||   ||| || |||||   ||| || |||| | ||||||||| ||||  |||| ||||||| ||    
T  25662152 cgaattacatgatttatcaaataaaaagactcaaaacgcatattaagttgttagttttgtg-aacaaatagaattacaataacccaaatgaaaataatac 25662250  T
Q  279 aaaatgtccattaaactataaacaacttatctaaaactcct-ttaaaataacctcaaatg 337  Q
    ||||||||| |||||| |||||||||| ||||||||||| | | ||||||||||||||||    
T  25662251 aaaatgtcctttaaaccataaacaactcatctaaaactcttctaaaaataacctcaaatg 25662310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 17041206 - 17041327
Alignment:
Q  85 aaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatgtcttccaaaacttcaatgagatatcgtgttttccgaa 184  Q
    ||||||| |||||||| |||||||||||||||||    || ||||||| ||| |||||| |||||||| ||| |||| ||||| | || || || |||||    
T  17041206 aaaatttccccaacttgtaatgtcttcaaatcctaattaaaccttgatcatcttcattctatgtcttcaaaatcttccatgaggtgtcttgattgccgaa 17041305  T
Q  185 ttacatgatttatcaataaaaa 206  Q
    || ||| |||||||| ||||||    
T  17041306 ttgcattatttatcactaaaaa 17041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 24248339 - 24248451
Alignment:
Q  48 tgttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatg 147  Q
    ||||||||||||| |||||||| || ||| ||   |||||||||  ||||||| ||||||||||||| ||||  | | ||||||||||| |||||| |||    
T  24248339 tgttttccttctccgacttgttattaggacttgacacaaaatttctccaacttgtaatgtcttcaaacccttatagaaccttgataatcttcattctatg 24248438  T
Q  148 tcttccaaaactt 160  Q
    ||||  |||||||    
T  24248439 tcttgaaaaactt 24248451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 17033942 - 17034000
Alignment:
Q  52 ttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtctt 110  Q
    ||||| |||||||||||||||| || ||   |||||||||||||||||| |||||||||    
T  17033942 ttcctcctctgacttgttcttgagaattgcaacaaaattttcccaacttgtaatgtctt 17034000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 25367741 - 25367692
Alignment:
Q  176 ttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaa 225  Q
    |||||||| ||||||||||| ||| |||||||||| |||||| |||||||    
T  25367741 ttttccgatttacatgatttctcactaaaaagactcaaaacacctatgaa 25367692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 10703085 - 10703121
Alignment:
Q  176 ttttccgaattacatgatttatcaataaaaagactta 212  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  10703085 tttttcgaattacacgatttatcaataaaaagactta 10703121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 12878172 - 12878069
Alignment:
Q  140 attccatgtcttccaaaacttcaatgagatatcgtgttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgtttaatttat 239  Q
    |||| |||||||| |||||||| |||||||||| || || | ||||||||| ||||| ||||||||||| | |||||| |||| ||||||| || ||||     
T  12878172 attcaatgtcttcaaaaacttccatgagatatcttgcttgcggaattacataatttagcaataaaaagattcaaaacacctataaaattgtctagtttag 12878073  T
Q  240 ggaa 243  Q
    ||||    
T  12878072 ggaa 12878069  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 13835749 - 13835707
Alignment:
Q  175 gttttccgaattacatgatttatcaataaaaagacttaaaaca 217  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  13835749 gtttgccgaattacaagatttatcaataaaaagacttaaaaca 13835707  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 32854616 - 32854499
Alignment:
Q  50 ttttccttctctgacttgttcttgggatttatgacaaaattttcccaacttctaatgtcttcaaatccttccaaagccttgataatcatcattccatgtc 149  Q
    ||||||||||| |||||||||||| ||  |  ||||||||||  |||| || ||||||||| ||| ||||| | | ||||||| ||| ||||| ||||||    
T  32854616 ttttccttctccgacttgttcttgagacctgagacaaaatttctccaatttataatgtctttaaagccttctagaaccttgatgatcttcattacatgtc 32854517  T
Q  150 ttccaaaacttcaatgag 167  Q
    |||  ||||||| |||||    
T  32854516 ttcataaacttccatgag 32854499  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 23419083 - 23419117
Alignment:
Q  183 aattacatgatttatcaataaaaagacttaaaaca 217  Q
    ||||||||||||||| |||||||||||||||||||    
T  23419083 aattacatgatttattaataaaaagacttaaaaca 23419117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 23946819 - 23946864
Alignment:
Q  185 ttacatgatttatcaataaaaagacttaaaacatctatgaaattgt 230  Q
    |||||||||||||||||||||||||| ||||||  |||||| ||||    
T  23946819 ttacatgatttatcaataaaaagactcaaaacacttatgaagttgt 23946864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 32930449 - 32930493
Alignment:
Q  185 ttacatgatttatcaataaaaagacttaaaacatctatgaaattg 229  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||    
T  32930449 ttacatgatttctcactaaaaagactcaaaacatctatcaaattg 32930493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 30625007 - 30624960
Alignment:
Q  182 gaattacatgatttatcaataaaaagacttaaaacatctatgaaattg 229  Q
    |||||||||||||| |||||||||||||| |||||| |||||||||||    
T  30625007 gaattacatgatttttcaataaaaagactcaaaacacctatgaaattg 30624960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 30243088 - 30243129
Alignment:
Q  282 atgtccattaaactataaacaacttatctaaaactcctttaa 323  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  30243088 atgtcccttaaaccataaacaacttatctaaaactcctttaa 30243129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 13275716 - 13275753
Alignment:
Q  180 ccgaattacatgatttatcaataaaaagacttaaaaca 217  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  13275716 ccgaattacatgatttagcaataaaaagactcaaaaca 13275753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 24042295 - 24042380
Alignment:
Q  146 tgtcttccaaaacttcaatgagatatcgtg-ttttccgaattacatgatttatcaataaaaagacttaaaacatctatgaaattgt 230  Q
    ||||||||| |||||| ||||||| |  || |||| | |||||| |||||||||| |||||| ||| |||||| ||||||||||||    
T  24042295 tgtcttccataacttccatgagatgttttgatttttcaaattacgtgatttatcagtaaaaaaactcaaaacacctatgaaattgt 24042380  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 11222091 - 11222129
Alignment:
Q  82 gacaaaattttcccaacttctaatgtcttcaaatccttc 120  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  11222091 gacaaaattttcccaacttgtaatgtcttcaaagccttc 11222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 13909740 - 13909774
Alignment:
Q  339 ctactaaagtgactcaaaaacatactaaaaataac 373  Q
    |||||||| ||||||||||||||||||||||||||    
T  13909740 ctactaaactgactcaaaaacatactaaaaataac 13909774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 26775222 - 26775194
Alignment:
Q  182 gaattacatgatttatcaataaaaagact 210  Q
    |||||||||||||||||||||||||||||    
T  26775222 gaattacatgatttatcaataaaaagact 26775194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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