View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2640-Insertion-22 (Length: 325)
Name: NF2640-Insertion-22
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 17814641 - 17814972
Alignment:
| Q |
8 |
tttgattcaattacggaggtaatttccattgaccattgaaaagttgatattctccaagctcttcatagaatccttacaagttgttttatgcgtggtgtag |
107 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17814641 |
tttgattcaattacggaggtaattttcattgaccattgaaaagttgatattctccaaggtcttcatagaatccttacaggttgttttatgcgtggtgtag |
17814740 |
T |
|
| Q |
108 |
atacaagtacagcttgctatttgatttcgacatcgataaaacttgaagagcaatctggaaagccatccgagaagcaagagaagcacaaatagcagcagct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17814741 |
atacaagtacagcttgctatttgatttcgacatcgataaaacttgaagagcaatctggaaagccattcgagaagcaagagaagcacaaatagcagcagct |
17814840 |
T |
|
| Q |
208 |
gtttcactaccaagtttaagtgattactcatatgacgaa---------------gaacacatcacacttggagattacggaagacttgacaacctcgaca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17814841 |
gtttcactaccaagtttaagtgattactcatatgacgaagaaacgtgagacgtggaacacatcacacttggagattacggaagacttgacaacctcgaca |
17814940 |
T |
|
| Q |
293 |
aagttgtccaagggtttcaaccggcgaatccc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17814941 |
aagttgtccaagggtttcaaccggcgaatccc |
17814972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 9941747 - 9941674
Alignment:
| Q |
247 |
gaacacatcacacttggagattacggaagacttgacaacctcgacaaagttgtccaagggtttcaaccggcgaa |
320 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||||| |||| | |||| ||||||||| |||| |||||| |
|
|
| T |
9941747 |
gaacgcatcacacttggagattatggaagactcaacaacatcgatgatgttgcccaagggttccaactggcgaa |
9941674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University