View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-25 (Length: 341)
Name: NF2640-Insertion-25
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-25 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 6 - 341
Target Start/End: Complemental strand, 29643109 - 29642774
Alignment:
| Q |
6 |
cagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaagaaa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29643109 |
cagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcagatgcaattaatataagtttgaagaaa |
29643010 |
T |
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| Q |
106 |
taagataattctgatttttccttttctaatcttagtaatgatctgtagataataaaacttttcaagtattataccaaaaacaatctttccaagcctaaat |
205 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
29643009 |
taaaataattctgatttttccttttctaatcttagtaatgatctgttgataataaaacttttcaagtcttataccaaaaacaatctttccaagcctaatt |
29642910 |
T |
|
| Q |
206 |
ttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctttggaagaatcatcttccagttacc |
305 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29642909 |
ttacttgtcacatcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctttggaagaatcatcttccagttacc |
29642810 |
T |
|
| Q |
306 |
aaacacttaggagtaggcaataggtaatcatttagc |
341 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
29642809 |
aaacacttaggagtagtcaataggtaatcatttagc |
29642774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 29648309 - 29648143
Alignment:
| Q |
6 |
cagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaagaaa |
105 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
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| T |
29648309 |
cagaaacatactttcaacaaatttgaactttaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatgcatttaatataaggttgaagaaa |
29648210 |
T |
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| Q |
106 |
taagataattctgatttttccttttctaatcttagtaatgatctgtagataataaaacttttcaagt |
172 |
Q |
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||| ||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |||| ||||| |
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| T |
29648209 |
taaaataattctggtttttccttttctcatctcagtaatgatctagtgataataaatctttccaagt |
29648143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 29820561 - 29820684
Alignment:
| Q |
6 |
cagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaagaaa |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
29820561 |
cagaaacatactttcaacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattttgaagcaaatggaattaatataagtttgaagaaa |
29820660 |
T |
|
| Q |
106 |
taagataattctgatttttccttt |
129 |
Q |
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||| ||| ||| |||||||||| |
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| T |
29820661 |
taaagtaactctagtttttccttt |
29820684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 29596920 - 29597104
Alignment:
| Q |
21 |
aacaactttgaacttcaatacaatacaaaaacgctcaccatctgcaaattgtgaagcagatgcaattaatataagtttgaagaaataagataattctgat |
120 |
Q |
| |
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||||| ||| ||||||||||| |||||||| |||||||||| |||||||| ||||||| || ||||||||||||||||||||||||| | || |||| |
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| T |
29596920 |
aacaaatttaaacttcaatacgatacaaaa-cgctcaccatttgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaaaaactctggc |
29597018 |
T |
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| Q |
121 |
ttttccttttctaatcttagtaatgatctgtagataataaaacttttcaagtattataccaaaaac-aatctttccaagcctaaat |
205 |
Q |
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| T |
29597019 |
ttttccttttctcatctcagtaatgatttatagataataaatctttttaagtcttctatcaaaaacaaatatttccaagtctaaat |
29597104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 63 - 287
Target Start/End: Original strand, 29593634 - 29593859
Alignment:
| Q |
63 |
tgcaaattgtgaagcagatgcaattaatataagtttgaagaaataagataattctgatttttccttttctaatcttagtaa-tgatctgtagataataaa |
161 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||||||||| | || ||| ||||||||||| | |||| ||||| |||||| ||||||||||| |
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| T |
29593634 |
tgcaaattttgaagcaaattgaattaatataagtttgaagaaataaaacaactcttgtttttccttttgtcatctcagtaattgatctatagataataaa |
29593733 |
T |
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| Q |
162 |
acttttcaagtattataccaaaaac-aatctttccaagcctaaatttacttgtca-cttcgcattgacttgtttcctgctttaacctttcagtctattac |
259 |
Q |
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||| |||| || |||||||||| || |||||||| |||||| ||||||||| ||| ||||||| |||||||| |||||||||||||||||| | |
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| T |
29593734 |
tatttctaagtcttctaccaaaaacaaagatttccaagtctaaatgtacttgtcattttcccattgacatgtttcctcctttaacctttcagtcta--at |
29593831 |
T |
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| Q |
260 |
taagagaaatttaatttgcctttggaag |
287 |
Q |
| |
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||||||||||| |||||| |||||||| |
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| T |
29593832 |
taagagaaattgaatttgattttggaag |
29593859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 29648155 - 29648066
Alignment:
| Q |
187 |
aatctttccaagcctaaatttacttgtcacttcgcattgacttgtttcctgctttaacctttcagtctattactaagagaaatttaattt |
276 |
Q |
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|||||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
29648155 |
aatctttccaagtctaaatttacatgtcacttcccattgacatgtttcctgatttaacctttcagtctattactaagagaaattgaattt |
29648066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 29820695 - 29820767
Alignment:
| Q |
229 |
tgtttcctgctttaacctttcagtctattactaagagaaatttaatttgcctttggaagaatcatcttccagttac |
304 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||| |
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| T |
29820695 |
tgtttcctactttaacctttcagtctataattaagagaaatttaa---ccttttggaagaatcatcttccagttac |
29820767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 29597213 - 29597253
Alignment:
| Q |
301 |
ttaccaaacacttaggagtaggcaataggtaatcatttagc |
341 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29597213 |
ttaccaaacacttgggagtaggcaataggtaatcatttagc |
29597253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 29820811 - 29820847
Alignment:
| Q |
305 |
caaacacttaggagtaggcaataggtaatcatttagc |
341 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
29820811 |
caaacacttaggagtaggcaatagataatcatttagc |
29820847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 332
Target Start/End: Complemental strand, 29648020 - 29647989
Alignment:
| Q |
301 |
ttaccaaacacttaggagtaggcaataggtaa |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29648020 |
ttaccaaacacttaggagtaggcaataggtaa |
29647989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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