View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-27 (Length: 246)
Name: NF2640-Insertion-27
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-27 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 16872098 - 16872335
Alignment:
| Q |
7 |
ataattaatgtcaaaaatacttgtgtttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatcatatagctaagaaacaatttct |
106 |
Q |
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| T |
16872098 |
ataattaatgtcaaaaatacttgt--ttcttcttccactaacaatctctagtagtaatactccgaagctaaagacatcatatagctaagaaacaatttct |
16872195 |
T |
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| Q |
107 |
tgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaatgagctcttcgtatattttacaatctttttggtgaaagagaaaggtg |
206 |
Q |
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| T |
16872196 |
tgcattgcgtattcgggagatatgcagtgactacatttaaagctcaaacgtaatgagctcttcgtatattttacaatctttttggtgaaagagaaaggtg |
16872295 |
T |
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| Q |
207 |
tgtatactttctatgttccaacaattcttgtcatatatcc |
246 |
Q |
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| T |
16872296 |
tgtatactttctatgttccaacaattcttgtcatatatcc |
16872335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 36286510 - 36286373
Alignment:
| Q |
17 |
tcaaaaatacttgtgtttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatcatatagctaagaaacaatttcttgcattgcgt |
116 |
Q |
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| T |
36286510 |
tcaaaaagacttgtgtttcttctaccaaaaacaatctctagtagtaatactccaaagctaaagacatcacattgctcggaaacaattccttgcattgcgt |
36286411 |
T |
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| Q |
117 |
attcgggagatatgcagtgactacatttaaagctcaaa |
154 |
Q |
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| T |
36286410 |
attctggagatatgtagcgactgcatttaaaggtcaaa |
36286373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 19939410 - 19939357
Alignment:
| Q |
32 |
tttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatca |
85 |
Q |
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| T |
19939410 |
tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca |
19939357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 19970549 - 19970496
Alignment:
| Q |
32 |
tttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatca |
85 |
Q |
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| T |
19970549 |
tttcttcttccactaataatctcaagaagtaaaactccaaagctaaagacatca |
19970496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 20231851 - 20231783
Alignment:
| Q |
16 |
gtcaaaaatacttgtgtttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatc |
84 |
Q |
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| T |
20231851 |
gtcataaaaacttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc |
20231783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 20243914 - 20243855
Alignment:
| Q |
25 |
acttgtgtttcttcttccactaacaatctctggtagtaatactccaaagctaaagacatc |
84 |
Q |
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| T |
20243914 |
acttgagtttcttcttccgataacaatctctagtagcaatacaccaaagctaaaaacatc |
20243855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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