View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-28 (Length: 262)
Name: NF2640-Insertion-28
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-28 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 18095570 - 18095365
Alignment:
| Q |
8 |
gtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaacaactaaccttattccttgaagcagcatccatggagatttgaac |
107 |
Q |
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| T |
18095570 |
gtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaagaactaaccttattccttgaagcagcatccatggagattggaac |
18095471 |
T |
|
| Q |
108 |
tgaaaatcaaaatcacgaagaagaaccgaggaagaaacctaagcagaaatcgctatcgctcaagtgaagtgagtgagtaaataaacacactgtcagtgca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18095470 |
tgaaaatcaaaatcacgaagaagaaccgaggaagaaacctaagcagaaatcgctatcgctgaagtgaagtgagtgagtaaataaacacactgtcagtgca |
18095371 |
T |
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| Q |
208 |
aaacaa |
213 |
Q |
| |
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|||||| |
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| T |
18095370 |
aaacaa |
18095365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18081365 - 18081249
Alignment:
| Q |
8 |
gtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaacaactaaccttattccttgaagcagcatccatggagatttgaac |
107 |
Q |
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||||||| || |||||||||||||||||||| ||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
18081365 |
gtaatttagaaagaatggagaaagcaatgtcatcgtgaatgtgagaatcagaagacc---taaccttcttctttgaagcagcatccatggagattggaac |
18081269 |
T |
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| Q |
108 |
tgaaaatcaaaatcacgaag |
127 |
Q |
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| T |
18081268 |
tgaaaatcaaaatcacgaag |
18081249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 18140339 - 18140442
Alignment:
| Q |
10 |
aatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaacaactaaccttattccttgaagcagcatccatggagatttgaactg |
109 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||| ||| ||||||||||| ||||||||||| || ||| |
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| T |
18140339 |
aatttagagagaatggagaaagcaatgtcatcgtgaatgtgagaaacagaag---tacttaccttcttctttgaagcagcagccatggagattggagctg |
18140435 |
T |
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| Q |
110 |
aaaatca |
116 |
Q |
| |
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||||||| |
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| T |
18140436 |
aaaatca |
18140442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 18081225 - 18081177
Alignment:
| Q |
181 |
tgagtaaataaacacactgtcagtgcaaaacaaagtgagtgggagatat |
229 |
Q |
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|||||||||| | |||||||||||||||| ||||||||||||||||||| |
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| T |
18081225 |
tgagtaaatagatacactgtcagtgcaaagcaaagtgagtgggagatat |
18081177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 12721503 - 12721458
Alignment:
| Q |
10 |
aatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaat |
55 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
12721503 |
aatttggagagaatagagaaagcaatgtcgtcgtgtatgtgagaat |
12721458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 37870372 - 37870338
Alignment:
| Q |
198 |
tgtcagtgcaaaacaaagtgagtgggagatattta |
232 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
37870372 |
tgtcagtgcaaagcaaagtgagtgggagatattta |
37870338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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