View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640-Insertion-3 (Length: 750)

Name: NF2640-Insertion-3
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640-Insertion-3
NF2640-Insertion-3
[»] chr5 (1 HSPs)
chr5 (8-750)||(43410470-43411236)


Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 750
Target Start/End: Original strand, 43410470 - 43411236
Alignment:
Q  8 gatcatgccttcatgcatgcatctaatattaatatccaggactaccatcagcagctgcaggaggatcttgatactaagcaattactgctacatttcaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||     
T  43410470 gatcatgccttcatgcatgcatctaatattaatatccaggactaccatcagc---tgcaggaggatcttgatactaagcaattactgctacatttcaac- 43410565  T
Q  108 acaacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaa 207  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410566 --aacaataatcaaatcctacctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaa 43410663  T
Q  208 ggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410664 ggcaactttcgcggatgaaaaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagat 43410763  T
Q  308 atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410764 atgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcat 43410863  T
Q  408 ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ct 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    
T  43410864 ctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagct 43410963  T
Q  504 agctagcttacaacttc---tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca 588  Q
    |||||||||||||||||   ||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410964 agctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatca 43411063  T
Q  589 atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaattaga 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  43411064 atgttagctcatatacctttactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattaga 43411163  T
Q  689 gttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtgattacataaactattttgt 750  Q
    ||||||||||||||||||||||||||||           ||||||||||| ||||||||||||||||||||||    
T  43411164 gttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtgattacataaactattttgt 43411236  T

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