View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-6 (Length: 714)
Name: NF2640-Insertion-6
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Complemental strand, 36283006 - 36282518
Alignment:
| Q |
8 |
ttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaacgtacctaaaggagaggaaatatgaacggtggtaggattttaca |
107 |
Q |
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| T |
36283006 |
ttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaacgtacctaaaggagaggaaatatgaacggtggtaggattttaca |
36282907 |
T |
|
| Q |
108 |
gtgacagtgaaatacggtgggaaagtatgatatgaagttaaaaggaagatgataaccatttggtaaagttaactgtttgagatagtgggcggtggcggtt |
207 |
Q |
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| T |
36282906 |
gtgacggtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataaccatttggtaaagttaattgtttgagatagtgggcggtggcggtt |
36282807 |
T |
|
| Q |
208 |
tggcggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgtacacaaagaggaagaggatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282806 |
tggcggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgtacacaaagaggaagaggatt |
36282707 |
T |
|
| Q |
308 |
acaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagtaattcaactttagttttct |
407 |
Q |
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| T |
36282706 |
acaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagtaatttaactttagttttct |
36282607 |
T |
|
| Q |
408 |
ctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaacccaaattcttacaaagagatagattttttagaggatgaagg |
496 |
Q |
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| T |
36282606 |
ctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaatccaaattcttacaaagagatagattttttagaggatgaagg |
36282518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 563 - 714
Target Start/End: Complemental strand, 36282458 - 36282307
Alignment:
| Q |
563 |
gaacgcggacaaagtttattctcaacaaatgatttagattgcaaactaaaactcttttttaaattaagaagaatctagaacctgagttcaattttcaaat |
662 |
Q |
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|||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||| |||| |||||||||||||||||| |
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| T |
36282458 |
gaacgcgggcaaagtttatcctcaacaattgatttagattgcaaactagaactcttctttaaactaagaagaatctggaacttgagttcaattttcaaat |
36282359 |
T |
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| Q |
663 |
ataataatcgtattaggataggagggagtaaagcgtcaatgtggtggaagga |
714 |
Q |
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| T |
36282358 |
ataataatcgtattaggagaggagggagtaaagcgtcaatgtggtggaagga |
36282307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 29914575 - 29914536
Alignment:
| Q |
30 |
taaataaaattagaggtgaaatggaagaggaaaacgtacc |
69 |
Q |
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| T |
29914575 |
taaatgaaattagaggtgaaatggaagaggaaaacgtacc |
29914536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 29963728 - 29963689
Alignment:
| Q |
30 |
taaataaaattagaggtgaaatggaagaggaaaacgtacc |
69 |
Q |
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| T |
29963728 |
taaatgaaattagaggtgaaatggaagaggaaaacgtacc |
29963689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
413 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
454 |
Q |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
402 |
ttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
454 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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