View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640-Insertion-7 (Length: 759)
Name: NF2640-Insertion-7
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Complemental strand, 4205947 - 4205378
Alignment:
| Q |
8 |
tttccagctcaactggtaacatgaacatcatgaaattgagaatatttacaaatcaagaatgcaaaataattacggaaaacaaagaaaataatttcacatt |
107 |
Q |
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| T |
4205947 |
tttccagctcaactggtaaaatgaacatcatgaaattgagaatatttacaaatcaagaatgcaaaataattacggaaaacaaagaaaataatttcaaatt |
4205848 |
T |
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| Q |
108 |
tataaatgaaatattctaatgatttcttgtgtcaataccaaaacgaggtccaaaatcaagagaagtaaaattatagttccttcttataaaggaatcatca |
207 |
Q |
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| T |
4205847 |
tataaatgaaatattctaatgatttcttgtgtcaataccaaaacgaggtccaaaatcaagagaagtaaaattatagttccttcttataaaggaatcatca |
4205748 |
T |
|
| Q |
208 |
tcattatcaatagaacaaacccgttatgaaggcaccctataaataatnnnnnnnnnnnntggtaacataacattctgtgtagcttctgtaaaataaaatc |
307 |
Q |
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| T |
4205747 |
tcattatcaatagaacaaacccgttatgaaggcaccttttaaataat--aaaaaaaaaatggtaacataacattctgtgtagcttctgtaaaataaaatc |
4205650 |
T |
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| Q |
308 |
acggtgtctcattgtaattctgctaaattcaccgcgaat----ccatgcattaagatgacaattactagctacacaatttgtaatcatttacaggtaaat |
403 |
Q |
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| T |
4205649 |
acggtgtctcattgtaattctactaaattcaccgcgaatccaaccatgcattaagatgacaattactagctacacaatttgtaatcatttacaggtaaat |
4205550 |
T |
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| Q |
404 |
ggaataattaactgatccaataagnnnnnnnngagtaaatcttgattgcatcataacaaaacgaggtaataaagaaaaagaatgaatataacatacaatg |
503 |
Q |
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| T |
4205549 |
ggaataattaactgatccaataa-----aaaagagtaaatcttgattgcatcataacaaaacgaggtaataaagaaaaagaatgaatataacatacaatg |
4205455 |
T |
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| Q |
504 |
aaacctgagctcgtcgggactaatagtgattaagggagttgcagtcatgacgaagaagagaatgataattaattaag |
580 |
Q |
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| T |
4205454 |
aaacctgagctcgtcgggactaatagtgattaagggagttgcagtcatgacgaagaagagaatgataattaattaag |
4205378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 759
Target Start/End: Complemental strand, 4205234 - 4205205
Alignment:
| Q |
730 |
tggtgatgtaggagtgagaaatgaagagaa |
759 |
Q |
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| T |
4205234 |
tggtgatgtaggagtgagaaatgaagagaa |
4205205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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