View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640R-Insertion-10 (Length: 383)
Name: NF2640R-Insertion-10
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640R-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 29643191 - 29643349
Alignment:
| Q |
98 |
cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||| |
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| T |
29643191 |
cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacgacccaactgcaagcacatcaagagttattgctggaatggt-gtggta |
29643289 |
T |
|
| Q |
198 |
gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagtcttaga |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29643290 |
gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagttttaga |
29643349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 29643312 - 29643445
Alignment:
| Q |
247 |
atagtcttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattgg |
346 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29643312 |
atagttttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattgg |
29643411 |
T |
|
| Q |
347 |
ctattatggatcaaatgtactcttcttgttaatt |
380 |
Q |
| |
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| T |
29643412 |
ctattatggatcaaatgtactcttcttattaatt |
29643445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 29648425 - 29648573
Alignment:
| Q |
98 |
cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta |
197 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
29648425 |
cggtgtatcactctcttgtataatacggatcctttttgaattataggtctacgacccaactgcaagcacatcgagagttat-----------tggtggta |
29648513 |
T |
|
| Q |
198 |
gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagtcttaga |
257 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
29648514 |
gatggtggcatgaaaggaagaaatagttttagaactcattttatataagatagttttaga |
29648573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 29820445 - 29820303
Alignment:
| Q |
98 |
cggtgcatcactctcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattgctggattaatggtggta |
197 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||| |||||||| |
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| T |
29820445 |
cggtgtatcactctcttgtataatacggatcctttttgagttataggtctacgacccaaatgcaagcacatcaagag-----------ttactggtggta |
29820357 |
T |
|
| Q |
198 |
gatggtggcatgaaaggaaaaaatagttttagaactcattttatataagatagt |
251 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
29820356 |
gatggtggcatgaaaggaagaaatagttttagaactcattttatataagatagt |
29820303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 29648536 - 29648664
Alignment:
| Q |
247 |
atagtcttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattgg |
346 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
29648536 |
atagttttagaactcattttatataagatagttttagataatctctctcttggatttttttgaaagtgttgactaatagagtttaataccgactcattgg |
29648635 |
T |
|
| Q |
347 |
ctattatggatcaaatgtactcttcttgttaatt |
380 |
Q |
| |
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|||| ||| ||||||||||||||| |||||| |
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| T |
29648636 |
ctat---gga--aaatgtactcttcttattaatt |
29648664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 29643103 - 29643152
Alignment:
| Q |
9 |
gtttctgcacacattttcctttgtcacatttgggctttgtattgtattca |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29643103 |
gtttctgcacacattttcctttgtcacatttgggctttgtattgtattca |
29643152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 29596863 - 29596794
Alignment:
| Q |
111 |
tcctgtataatacggatcctttttgaattataggtctacaacccaactgcaagcacatcaagagttattg |
180 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| | ||||||||| ||||||||||||| ||||||||| |
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| T |
29596863 |
tcctgtataatccggctcctctttgaattataggccaacaacccaattgcaagcacatcatgagttattg |
29596794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 29593455 - 29593313
Alignment:
| Q |
105 |
tcactctcctgtataatacggatcctttttgaattataggtctaca-acccaactgcaagcacatcaagagttattgctggattaatggtggtagatggt |
203 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| ||| || || ||||||||||||||||||||||| ||| | ||||||| ||| | |
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| T |
29593455 |
tcactctcctgtataacatggatcctttttgaattataggcagacaggcctaaatgcaagcacatcaagagttattgatgg-tagatggtgg--catgat |
29593359 |
T |
|
| Q |
204 |
ggcatgaaaggaaaaaatagttttagaactcattttatataagata |
249 |
Q |
| |
|
| | |||||||| ||||||| ||| ||||||||||||||||||| |
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|
| T |
29593358 |
aggaagaaaggaagaaatagtattattactcattttatataagata |
29593313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 29596719 - 29596674
Alignment:
| Q |
285 |
tgatgtctctcttggatttctttgaaagtgttgactaatagagttt |
330 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
29596719 |
tgatgtctcttttggatttctttgaaagtgttgactaattgagttt |
29596674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 29820334 - 29820302
Alignment:
| Q |
247 |
atagtcttagaactcattttatataagatagtt |
279 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
29820334 |
atagttttagaactcattttatataagatagtt |
29820302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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