View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640R-Insertion-4 (Length: 627)
Name: NF2640R-Insertion-4
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640R-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 221 - 540
Target Start/End: Complemental strand, 22536832 - 22536506
Alignment:
| Q |
221 |
atatccttcttcataatttttccaagataatatttctattttagttttcttaacaagttcataaagacacgatcatcatcctttccctatatttatttat |
320 |
Q |
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| T |
22536832 |
atatccttctttataatttttccaagataatatttctattttagttttcttaacaagttcataaagacacgatcatcatcctttccctatatttatttat |
22536733 |
T |
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| Q |
321 |
caatggcatagtttaaaatttgg-atgttttcatttaagttcacaagatcatgaaatgtttcgcaaagcccctaaactaatttgctgcatctaattcatc |
419 |
Q |
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| T |
22536732 |
caatggcatattttaaaacttgggatgttttcatttaagttcataagatcatgaaatgtttcgcaaagcccctaaactaatttgctgcatctaattcatc |
22536633 |
T |
|
| Q |
420 |
aggaaaaatatcaaggctattactactttcctcatgagtcatgatagagtaata------tataggtgacattgagcatataagttatacaaattcaagc |
513 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
22536632 |
aggaaaaataccaaggctattactactttcctcatcagtcctgatagagtaatatatatatataggtgacatttagcatataagttatacaaattcaagc |
22536533 |
T |
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| Q |
514 |
agtttccaccaagtaattggatatata |
540 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
22536532 |
agttgccaccaagtaattggatatata |
22536506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 542 - 627
Target Start/End: Complemental strand, 22535420 - 22535335
Alignment:
| Q |
542 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacatatatttgtttttgttgtcaatgatttgcat |
627 |
Q |
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| T |
22535420 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacgtatatttgtttttgttgtcaatgatttgcat |
22535335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 22537035 - 22536941
Alignment:
| Q |
19 |
gtgattatagctttttaaaaaat-aaatcgtgaaaatgagcaaacctcgagatgatcaaccaagcaactaagaagttgatctagattatgtgatg |
112 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22537035 |
gtgattatggctttttaaaaagttaaatcgtgaaaatgagcaaacctcgagattatcaaccaagcaattaagaagttgatctagattatgtgatg |
22536941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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