View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640R-Insertion-5 (Length: 556)
Name: NF2640R-Insertion-5
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640R-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 14735463 - 14735997
Alignment:
| Q |
9 |
gtcctaactcgcttaaagcaagctaaactgacctggagcgagtaaactccagagagaactagcctgaagcgagtcaggagcgagtaactagcttataact |
108 |
Q |
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| T |
14735463 |
gtcctaactcgcttaaagcaagctaaactgacctggagcgagtaaactccagagagaactcgcctgaagcgagt-----------aactagcttataact |
14735551 |
T |
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| Q |
109 |
cgcatggagtgagttttgacagcacagttgtgttgtcgacttgttccgtagttctgtagtgcagtctggggcccagttttgctgtattttcttttaatat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
14735552 |
cgcatggagtgagttttgacagcacagttgtgttgtcgactcgttccgtagttctgtagtgcagtccggggcccagttttgctgtattttcttataatat |
14735651 |
T |
|
| Q |
209 |
gtaaccctcaataccagtgacccatatgctagtgttnnnnnnnttactttaaggaaaatcaacaagtaagtattggcgttattaagtgaagcataatatt |
308 |
Q |
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| T |
14735652 |
gtaaccctcaataccagtgacccatatgctagtgttacaaaaattactttaaggaaaatcaacaagtaagtattggcgttattaagcgaagcataatatt |
14735751 |
T |
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| Q |
309 |
tgagagcatgattatgtatacggtatgtgtgggtagtatgctaacccttaatgtatgggaagacccgttctctagagtaacgtttagagtaatgtctttc |
408 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14735752 |
tgagagcatgattatgtatatggtatgtgtgggtagtatgctaacccttaatgtatgggaagacccgttctctagagtaatgtttagagtaatgtctttc |
14735851 |
T |
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| Q |
409 |
acaaaggaaattatgtattctaaggaagtatgttcaaaaagggtattaggatataaggaagagaaaaattcaactagataaaggaatgtttcgtgactac |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14735852 |
acaaaggaaattatgtattctaaggaagtatgttcaaaaagggtattaggatataaggaagataaaaattcaactagataaaggaatgtttcgtgactac |
14735951 |
T |
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| Q |
509 |
atttagagatacttcatgaggtaagccatccaccgtactaccttgc |
554 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14735952 |
atatagagatacttcatgaggtaagccatccaccgtactaccttgc |
14735997 |
T |
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