View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640R-Insertion-6 (Length: 478)

Name: NF2640R-Insertion-6
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640R-Insertion-6
NF2640R-Insertion-6
[»] chr6 (31 HSPs)
chr6 (8-478)||(31284517-31284987)
chr6 (8-454)||(26729210-26729678)
chr6 (8-454)||(26623232-26623701)
chr6 (285-361)||(26623636-26623712)
chr6 (285-361)||(26729613-26729689)
chr6 (384-478)||(27214649-27214743)
chr6 (384-478)||(27234485-27234579)
chr6 (378-440)||(28234830-28234892)
chr6 (119-172)||(26647031-26647084)
chr6 (119-172)||(26752999-26753052)
chr6 (135-172)||(26802998-26803035)
chr6 (379-440)||(28181381-28181442)
chr6 (379-440)||(28227217-28227278)
chr6 (378-440)||(26937373-26937435)
chr6 (138-172)||(27610716-27610750)
chr6 (378-440)||(28185633-28185695)
chr6 (378-440)||(28297571-28297633)
chr6 (378-440)||(28325744-28325806)
chr6 (378-440)||(28514440-28514502)
chr6 (135-172)||(25539095-25539132)
chr6 (119-172)||(27592598-27592651)
chr6 (119-172)||(27604281-27604334)
chr6 (119-172)||(27677197-27677250)
chr6 (119-172)||(27679502-27679555)
chr6 (119-172)||(27705981-27706034)
chr6 (388-424)||(25580002-25580038)
chr6 (388-424)||(26056209-26056245)
chr6 (388-424)||(26076179-26076215)
chr6 (378-478)||(27337923-27338023)
chr6 (378-478)||(27398663-27398763)
chr6 (378-430)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (378-440)||(34992-35054)
scaffold0038 (379-440)||(27715-27776)
scaffold0038 (378-440)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (335-424)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (378-434)||(3279976-3280032)
[»] chr4 (4 HSPs)
chr4 (378-447)||(5090806-5090875)
chr4 (135-171)||(18679149-18679185)
chr4 (135-171)||(18723674-18723710)
chr4 (135-171)||(18731093-18731129)
[»] scaffold0019 (1 HSPs)
scaffold0019 (378-434)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 31284987 - 31284517
Alignment:
Q  8 agctttaagattgaatgatttaggtacataaattaaaggcaaaacaagattaaagggaagtagagtacctctgactacaatcacttgacaagtctggtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284987 agctttaagattgaatgatttaggtacataaattaaaggcaaaacaagattcaagggaagtagagtacctctgactacaatcacttgacaagtctggtgt 31284888  T
Q  108 ctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatctatatct 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  31284887 ctgattaaaagctatcttcccagtaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaataaaaaaacaatcacatctatatct 31284788  T
Q  208 tgacgaatatatcatacaattctaattgttttgacatacaataactagtatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284787 tgacgaatatatcatacaattctaattgttttgacatacaataactaatatttgtttaaatatataaataaaaaatgtttcccttttaagcatttatatg 31284688  T
Q  308 gaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284687 gaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagaaggctacccaggagaacgatggtcgccagacaagttagctgcttgagt 31284588  T
Q  408 aagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284587 aagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 31284517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 26729678 - 26729210
Alignment:
Q  8 agctttaagattgaatgatttaggtacataaattaaag---gcaaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtc 101  Q
    |||||||||||||||||||||||| | ||||| |||||   ||||||||||||| ||| |||||||||||||  ||||||||||   | |||||| ||||    
T  26729678 agctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtc 26729579  T
Q  102 tggtgtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnncaatcacatct 201  Q
     |||||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||        |||||||| |    
T  26729578 cggtgtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaataatcacattt 26729483  T
Q  202 atatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaag 297  Q
    ||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||||||||||||    
T  26729482 atatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaag 26729383  T
Q  298 catttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatgg 381  Q
    |||| |||||||||||||| ||||||| ||||||||||                |||||||||||||||||||||||||||||||||||||  |||||||    
T  26729382 cattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatgg 26729283  T
Q  382 tcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 454  Q
    || |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26729282 tctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26729210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 26623701 - 26623232
Alignment:
Q  8 agctttaagattgaatgatttaggtacataaattaaag---gcaaaacaagattaaagggaagtagagtacctctgactacaat---cacttgacaagtc 101  Q
    |||||||||||||||||||||||| | ||||| |||||   ||||||||||||| ||| |||||||||||||  ||||||||||   | |||||| ||||    
T  26623701 agctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtagagtacccttgactacaatggtcgcttgacgagtc 26623602  T
Q  102 tggtgtctgattaaaagctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagttggtgaacaaatnnnnnnnc-aatcacatc 200  Q
     |||||||| | || || |||||||| || ||||||||||||||||||||| ||||| ||||||||   ||| || ||||||         ||||||||     
T  26623601 cggtgtctggtcaagagttatcttcctagtaagcttgtattcatatctattaatgcc-aacaagat---ttgttgcacaaataaaaaaaataatcacatt 26623506  T
Q  201 tatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gtttcccttttaa 296  Q
    |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   |||||||||||||    
T  26623505 tatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgtttcccttttaa 26623406  T
Q  297 gcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccaggagaacgatg 380  Q
    ||||| |||||||||||||| ||||||| ||||||||||                |||||||||||||||||||||||||||||||||||||  ||||||    
T  26623405 gcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccaggatgacgatg 26623306  T
Q  381 gtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattat 454  Q
    ||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||    
T  26623305 gtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattat 26623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  285 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 361  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  285 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 361  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 478
Target Start/End: Complemental strand, 27214743 - 27214649
Alignment:
Q  384 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 478  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||    
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttag 27214649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 478
Target Start/End: Original strand, 27234485 - 27234579
Alignment:
Q  384 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 478  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||    
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttag 27234579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 28234892 - 28234830
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 28234830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 26647084 - 26647031
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26647084 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26647031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 26753052 - 26752999
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    |||||||||||  || |||||||||||||||||||||| || ||||||||||||    
T  26753052 ctatcttcccaataaacttgtattcatatctattcatgtcccacaagataagtt 26752999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 26803035 - 26802998
Alignment:
Q  135 cttgtattcatatctattcatgcccaacaagataagtt 172  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26803035 cttgtattcatatctattcatgtccaacaagataagtt 26802998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 28181442 - 28181381
Alignment:
Q  379 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 28181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 28227278 - 28227217
Alignment:
Q  379 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccat 28227217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 27610716 - 27610750
Alignment:
Q  138 gtattcatatctattcatgcccaacaagataagtt 172  Q
    |||||||||||||||||||||||| ||||||||||    
T  27610716 gtattcatatctattcatgcccaataagataagtt 27610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 28185695 - 28185633
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28185633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 28297571 - 28297633
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 28514502 - 28514440
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccat 28514440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 25539132 - 25539095
Alignment:
Q  135 cttgtattcatatctattcatgcccaacaagataagtt 172  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  25539132 cttgtattcatatctattcatgtccaataagataagtt 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 27592598 - 27592651
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27592598 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27592651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 27604281 - 27604334
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    ||||||| |||  ||||| ||||||||||||||||||| |||| ||||||||||    
T  27604281 ctatctttccaataagctcgtattcatatctattcatgtccaataagataagtt 27604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 27677197 - 27677250
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27677197 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 27679555 - 27679502
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27679555 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27679502  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 27705981 - 27706034
Alignment:
Q  119 ctatcttcccagcaagcttgtattcatatctattcatgcccaacaagataagtt 172  Q
    ||||||| |||  |||||||||||||||||||||||||  ||| ||||||||||    
T  27705981 ctatctttccaataagcttgtattcatatctattcatgtgcaataagataagtt 27706034  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  388 gacaagttagctgcttgagtaagagctatcttccatt 424  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  388 gacaagttagctgcttgagtaagagctatcttccatt 424  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  388 gacaagttagctgcttgagtaagagctatcttccatt 424  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 27337923 - 27338023
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 477  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  478 g 478  Q
    |    
T  27338023 g 27338023  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 27398663 - 27398763
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 477  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  478 g 478  Q
    |    
T  27398763 g 27398763  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 430  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 35054 - 34992
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| |||||    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccat 34992  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 27776 - 27715
Alignment:
Q  379 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccat 27715  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 440  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 28127481 - 28127570
Alignment:
Q  335 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatt 424  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||    
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccatt 28127570  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 434  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 5090806 - 5090875
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatct 447  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | ||||||| ||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatct 5090875  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 18679149 - 18679185
Alignment:
Q  135 cttgtattcatatctattcatgcccaacaagataagt 171  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18679149 cttgtattcatatctattcatgtccaataagataagt 18679185  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 18723674 - 18723710
Alignment:
Q  135 cttgtattcatatctattcatgcccaacaagataagt 171  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18723674 cttgtattcatatctattcatgtccaataagataagt 18723710  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 18731093 - 18731129
Alignment:
Q  135 cttgtattcatatctattcatgcccaacaagataagt 171  Q
    |||||||||||||||||||||| |||| |||||||||    
T  18731093 cttgtattcatatctattcatgtccaataagataagt 18731129  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 58140 - 58196
Alignment:
Q  378 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 434  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| ||||||||    
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacct 58196  T

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