View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640R-Insertion-7 (Length: 463)

Name: NF2640R-Insertion-7
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640R-Insertion-7
NF2640R-Insertion-7
[»] chr8 (13 HSPs)
chr8 (8-454)||(18095565-18096006)
chr8 (19-254)||(18140096-18140331)
chr8 (168-273)||(18081508-18081613)
chr8 (8-91)||(18081360-18081443)
chr8 (8-108)||(12723997-12724097)
chr8 (8-108)||(12646232-12646332)
chr8 (8-108)||(12651364-12651464)
chr8 (17-108)||(13025664-13025755)
chr8 (13-107)||(12712662-12712756)
chr8 (19-98)||(12721511-12721590)
chr8 (8-108)||(12704868-12704968)
chr8 (48-98)||(27183143-27183193)
chr8 (48-98)||(27231092-27231142)
[»] chr4 (2 HSPs)
chr4 (48-108)||(4876024-4876084)
chr4 (8-108)||(1326392-1326492)
[»] chr3 (1 HSPs)
chr3 (8-108)||(5387576-5387676)
[»] chr1 (2 HSPs)
chr1 (40-108)||(17747323-17747391)
chr1 (47-94)||(40399723-40399770)


Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 18095565 - 18096006
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  18095565 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttccgcaccaattt 18095664  T
Q  108 cctcaaatccaaacacgatgacgatgccgaaacacgtctcctcgtatttgaacagtcagggtttcccattcagcaatctctttccatcctttctggtgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095665 cctcaaatccaaacacgatgacgatgccgaaacacgtctcctcttattggaacagtcagggtttcccattcagcaatctctttccatcctttctggtgaa 18095764  T
Q  208 aggtttgaaattagggctaatttggaatggccacttcctcttcaacagcaaggtgacaatgccaatcaatttccttttccttttcaaatgggtggtggta 307  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095765 aggtttgaaattagggctaatttggattggccacttcctcttcaacagcaaggtgacaatgccaatcaatttccttttccttttcaaatgggtggtggta 18095864  T
Q  308 acgaaatcaatgtcaatgacattgcttttctagagggtgatgtgggtgatgaaaatgccaatctttttcctgttcaagtgggtggtggtaacaatgccaa 407  Q
    |||||||||||||||||||| |||||||| |      | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18095865 acgaaatcaatgtcaatgactttgctttttt-----ttcaagtgggtgatgaaaatgccaatctttttccttttcaagtgggtggtggtaacaatgccaa 18095959  T
Q  408 cgccaatctctttccttttcaagtgggcaacaacaatgactatgcca 454  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  18095960 cgccaatctctttccttttcaagtgggcaacaacaatgacaatgcca 18096006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 18140331 - 18140096
Alignment:
Q  19 aaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaatttcctcaaatcca 118  Q
    ||||| ||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||  ||||    
T  18140331 aaatctctcaaacgttttacctgtgctaaaaaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaatttcctcatttcca 18140232  T
Q  119 aacacgatgacgatgccgaaacacgtctcctcgtatttgaacagtcagggtttcccattcagcaatctctttccatcctttctggtgaaaggtttgaaat 218  Q
    ||||| ||||||| || || |  ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  18140231 aacaccatgacgaagctgagatccgtctcctcatattggaacggtcagggtttcacattcagcaatctctttccattctttctggtgaaaggtttgaaat 18140132  T
Q  219 tagggctaatttggaatggccacttcctcttcaaca 254  Q
    |||||||||||| || || ||||||||  |||||||    
T  18140131 tagggctaatttagattgcccacttccatttcaaca 18140096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 18081508 - 18081613
Alignment:
Q  168 gtttcccattcagcaatctctttccatcctttctggtgaaaggtttgaaattagggctaatttggaatggccacttcctcttcaacagcaaggtgacaat 267  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  18081508 gtttaccattcagcaatccctttccatcctttctggtgataggtttgagaatagggttaatttggaatggccacttcctcttcaacaacaaggtaacaat 18081607  T
Q  268 gccaat 273  Q
    ||||||    
T  18081608 gccaat 18081613  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 18081360 - 18081443
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaaca 91  Q
    ||||||||  |||||| |||| ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18081360 aattaccttacaaatctctcacacgtttcacttgtgctaaaaaatcatggtctcttctttttcaaaaccctaatttcatgaaca 18081443  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 12723997 - 12724097
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||| ||||| ||||| |||| ||||||||| |||||| | ||||||||||||||| | ||||||||| ||| |||||||||||||||||| ||||||||    
T  12723997 aattgcctcttaaatctctcacacgtttcacttgtgctcaaaaatcatggtctcttttgttccaaaactctattttcatgaacatgttccgcaccaattt 12724096  T
Q  108 c 108  Q
    |    
T  12724097 c 12724097  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 12646232 - 12646332
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||| ||||| ||||| |||| | | |||||||||||||| ||| ||||||||||| | || ||||||||| ||||||||||| ||||||| || |||||    
T  12646232 aattgcctcttaaatccctcacaagattcacctgtgctaagaaaccatggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaattt 12646331  T
Q  108 c 108  Q
    |    
T  12646332 c 12646332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 12651364 - 12651464
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||| ||||| ||||| |||| |||  ||||||||||||| |||| |||||||||| | || ||||||||| ||||||||||| ||||||| || |||||    
T  12651364 aattgcctcttaaatctctcacacgactcacctgtgctaagaaataatggtctcttttatttcaaaaccctcatttcatgaacttgttccgcactaattt 12651463  T
Q  108 c 108  Q
    |    
T  12651464 c 12651464  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 13025755 - 13025664
Alignment:
Q  17 tcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaatttc 108  Q
    ||||||| |||  ||||||||| |||||||| |||||||||||||||||| |  ||||||  | ||||||||||||||| || |||||||||    
T  13025755 tcaaatccctcgcacgtttcacttgtgctaaaaaatcatggtctcttcttcttgaaaaccacactttcatgaacatgtttcgcaccaatttc 13025664  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 12712756 - 12712662
Alignment:
Q  13 cctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||||||||||||||||||| ||||| |||| ||| |||||||  || ||| | || |||| |||| |||| ||||||||||| |||||||||||    
T  12712756 cctctcaaatcactcaaacgattcacatgtgttaaaaaatcattttcccttttatttcaaagccctgattttatgaacatgtttcgtaccaattt 12712662  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 12721511 - 12721590
Alignment:
Q  19 aaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccg 98  Q
    ||||| |||||||| ||||| |||| ||| |||||||||| |||| | |||||||||||||  |||||||| ||||||||    
T  12721511 aaatctctcaaacgattcacttgtgttaaaaaatcatggtttcttttattccaaaaccctatattcatgaatatgttccg 12721590  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 12704868 - 12704968
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||| ||||| ||||| |||||||| ||||| |||| ||| |||||||  || ||| | || |||| |||| |||| |||||||||||||| ||||||||    
T  12704868 aattgcctcttaaatccctcaaacgattcacatgtgttaaaaaatcattttcccttttatttcaaagccctgattttatgaacatgttccgaaccaattt 12704967  T
Q  108 c 108  Q
    |    
T  12704968 c 12704968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 27183143 - 27183193
Alignment:
Q  48 caaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccg 98  Q
    |||||||||||||||| | || ||||||||||||||||| ||| |||||||    
T  27183143 caaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccg 27183193  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 27231142 - 27231092
Alignment:
Q  48 caaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccg 98  Q
    |||||||||||||||| | || ||||||||||||||||| ||| |||||||    
T  27231142 caaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccg 27231092  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 4876024 - 4876084
Alignment:
Q  48 caaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaatttc 108  Q
    |||||||| ||||||| | || ||||||||||||||||||||||||||||| |||||||||    
T  4876024 caaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttc 4876084  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 1326392 - 1326492
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    |||||||||||||||| |||||||| || || |||||   |||| ||| ||||||| | || ||||||||| ||||||||   ||||| || ||||||||    
T  1326392 aattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatgtttcgcaccaattt 1326491  T
Q  108 c 108  Q
    |    
T  1326492 c 1326492  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 5387576 - 5387676
Alignment:
Q  8 aattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaattt 107  Q
    ||||||| |||||||| ||||| || || ||||||||   |||||| ||||||||| | || |||||||||||||||||| |  ||||||| ||||||||    
T  5387576 aattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaattt 5387675  T
Q  108 c 108  Q
    |    
T  5387676 c 5387676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 17747323 - 17747391
Alignment:
Q  40 tgtgctaacaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgttccgtaccaatttc 108  Q
    |||||||| |||||||||||| ||||||||||||| | | |||||||||| ||||| || | |||||||    
T  17747323 tgtgctaaaaaatcatggtcttttcttttccaaaagctttatttcatgaatatgtttcgaaacaatttc 17747391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 40399770 - 40399723
Alignment:
Q  47 acaaatcatggtctcttcttttccaaaaccctaatttcatgaacatgt 94  Q
    ||||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  40399770 acaaatcatggactcttttattcgaaaaccctaatttcatgaacatgt 40399723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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