View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2640R-Insertion-9 (Length: 452)
Name: NF2640R-Insertion-9
Description: NF2640R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640R-Insertion-9 |
 | |
|
| [»] scaffold0911 (1 HSPs) |
| | |
|
| [»] scaffold0162 (1 HSPs) |
| | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0911 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 2962 - 3352
Alignment:
| Q |
8 |
agaaccagcacgcgcaggtgcaacattcatgtcagtatcatcctcgcgtgtagtatgtgctatctcaatcggtctggattgtgcttgtgttgaatgttca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2962 |
agaaccagcacgcgcaggtgcaacattcatgtcagtatcatcctggcgtgtagtatgtgctatctcaatcggtctggattgtgcttgagttgaatgttca |
3061 |
T |
|
| Q |
108 |
aaagccataacatcaaaagaggagtgctgaagtggtgcggcagtgccaccccttgcattatcatgttgtgattcaatgtctgtggcattgatttcctcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3062 |
aaagccataacatcaaaagaggagtgctgaagtggtgcggcagtcccaccccttgcattatcatgttgtgattcaatgtctgtggtattgatttcctcaa |
3161 |
T |
|
| Q |
208 |
gtacatgagcaaatgtgtaaggcagcttatcatggtgaatggctgagctaacattttcataagtaaaggtcatggtcgtagattctttgtgcatttgcaa |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3162 |
gtacatgagcagatgtgtaaggcagcttatcatggtgaatggctgagctaacattttcataagtaaaggtcatggtcgtagattctttgtgcatttgcaa |
3261 |
T |
|
| Q |
308 |
atctgtttgcaattcggcttgagacaccggaatggaaacatccccagcctcttccacttgtctggatgtggcttcaaactctagttgcaac |
398 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
3262 |
atctgtttgcaattcggcttgagacactggaatggaaacatcccgaacctcttccacttgtctggatgtgtcttcaaactctatttgcaac |
3352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 5232 - 5606
Alignment:
| Q |
16 |
cacgcgcaggtgcaacattcatgtcagtatcatcctcgcgtgtagtatgtgctatctcaatcggtctggattgtgcttgtgttgaatgttcaaaagccat |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
5232 |
cacgcgcaggtgcaacattcacgtcagtatcatcctcgcgtgtagtatttgctatctcaatcagtttggattgtgcttgtgctgaatgttcaaaagccat |
5331 |
T |
|
| Q |
116 |
aacatcaaaagaggagtgctgaagtggtgcggcagtgccaccccttgcattatcatgttgtgattcaatgtctgtggcattgatttcctcaagtacatga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5332 |
aacatcaaaagaggagtgctgaagtggtgcggcagtgccaccctttgcattatcatgttgtgattcaatgtctgtggtattgatttcctcaagtacatga |
5431 |
T |
|
| Q |
216 |
gcaaatgtgtaaggcagcttatcatggtgaatggctgagctaacattttcataagtaaaggtcatggtcgtagattctttgtgcatttgcaaatctgttt |
315 |
Q |
| |
|
||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5432 |
gcagatgtttaaggcagcttatcatagtgaatggctgagttaacattttcataagtaaaggtcatggccgtaggttctttgtgcatttgcaaatctgttt |
5531 |
T |
|
| Q |
316 |
gcaattcggcttgagacaccggaatggaaacatccccagcctcttccacttgtctggatgtggcttcaaactcta |
390 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5532 |
gcaattcgacttgagacaccggaatggaaacatccccaacctcttccacttgtctggatgtggcttcaaactcta |
5606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 27539608 - 27539659
Alignment:
| Q |
398 |
cataggagtcggtaaaactgcgggcacggcctctgatctgacgggaactact |
449 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
27539608 |
cataggagtcggtaaaactgcgggcactgcctctgatctgacaggaactact |
27539659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 16599462 - 16599513
Alignment:
| Q |
398 |
cataggagtcggtaaaactgcgggcacggcctctgatctgacgggaactact |
449 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |||| |||| |
|
|
| T |
16599462 |
cataggagtcggtaaaactgagggcattgcctctgatctgacaggaattact |
16599513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 15200148 - 15200202
Alignment:
| Q |
398 |
cataggagtcggtaaaactgcgggcacggcctctgatctgacgggaactacttcc |
452 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||| |||||||||||| |
|
|
| T |
15200148 |
cataggagtcggtaaaactgcagctactacctctgatctgacaggaactacttcc |
15200202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 452
Target Start/End: Original strand, 15219233 - 15219287
Alignment:
| Q |
398 |
cataggagtcggtaaaactgcgggcacggcctctgatctgacgggaactacttcc |
452 |
Q |
| |
|
||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||| |
|
|
| T |
15219233 |
cataggagttggtaaaactgcaagcactgcctatgatctgacaggaactacttcc |
15219287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University