View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_13 (Length: 487)
Name: NF2640_high_13
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 50390274 - 50390750
Alignment:
| Q |
1 |
acaagtcaatgagcttaaggttttttataatttcttgtacatctcacttgctcttgctggtttcttgttggttataattattatagagaagagtagtagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390274 |
acaagtcaatgagcttaaggttttttataatttcttgtacatctcacttgctcttgctggtttcttgttggttataattattatagagaagagtagtagt |
50390373 |
T |
|
| Q |
101 |
ttcacacagggtgggttcggtttaagtgctgctgtggtgattttcttgctttttctcccacttgctgttgtttttattgaagagaacaagatttggcaga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390374 |
ttcacacagggtgggttcggtttaagtgctgctgtggtgattttcttgctttttctcccacttgctgttgtttttattgaagagaacaagatttggcaga |
50390473 |
T |
|
| Q |
201 |
gtaaaaagcttgctttggttgacccttcaccagtgcaaatagtaacagaag--ccaacaacaacctcagttcaaca----acctctgctgtttcagtttc |
294 |
Q |
| |
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||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||| ||| | || | | |||||||||||||||||| |
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| T |
50390474 |
gtaaaaaacttgctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttc |
50390573 |
T |
|
| Q |
295 |
agtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagcacttttcagcatagacatg |
394 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50390574 |
agtcccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacgatacttcaagcacttttcagcatagacatg |
50390673 |
T |
|
| Q |
395 |
ttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaac |
471 |
Q |
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| T |
50390674 |
ttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaac |
50390750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 50393548 - 50394024
Alignment:
| Q |
1 |
acaagtcaatgagcttaaggttttttataatttcttgtacatctcacttgctcttgctggtttcttgttggttataattattatagagaagagtagtagt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| ||||| || |||||| |||||| |
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|
| T |
50393548 |
acaagttaatgagcttaaggttttttataatttcttgtatgtttcacttggccttgctggattcttgttggttatgattataatccagaagaagagtagt |
50393647 |
T |
|
| Q |
101 |
ttcacacagggtgggttcggtttaagtgctgctgtggtgattttcttgctttttctcccacttgctgttgtttttattgaagagaacaagatttggcaga |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
50393648 |
ttcacacagggtgagtttggtttaagtgctgctgtcgttgttttcttgctttttcttccacttgttgttgttttcattgaagagaacaagatttggcaga |
50393747 |
T |
|
| Q |
201 |
gtaaaaagcttgctttggttgacccttcaccagtgcaaatagtaacagaag--ccaacaacaacctcagttcaaca----acctctgctgtttcagtttc |
294 |
Q |
| |
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||||||| | ||||||||| || |||||||||||| ||||||||||||||| |||| ||| | || | | |||||||||||||||||| |
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| T |
50393748 |
gtaaaaaacatgctttggtagatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttc |
50393847 |
T |
|
| Q |
295 |
agtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagcacttttcagcatagacatg |
394 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
50393848 |
agctccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatggacatg |
50393947 |
T |
|
| Q |
395 |
ttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaac |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||||||||||||||||||||||| |
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|
| T |
50393948 |
ttgatactatttgtggcatgtatttgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaac |
50394024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 50385129 - 50385605
Alignment:
| Q |
1 |
acaagtcaatgagcttaaggttttttataatttcttgtacatctcacttgctcttgctggtttcttgttggttataattattatagagaagagtagtagt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| || || || |||||| |||| |
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|
| T |
50385129 |
acaagttaatgagcttaaggttttttataatttcttgtatatctcacttggtcttgctggattcttgttggttatgatcataattcagaagaaggttagt |
50385228 |
T |
|
| Q |
101 |
ttcacacagggtgggttcggtttaagtgctgctgtggtgattttcttgctttttctcccacttgctgttgtttttattgaagagaacaagatttggcaga |
200 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
50385229 |
ttttcacagagtgagtatggtttaagtgctgctgtcgttattttcttgctttttctaccacttgccgttgttttcattgaagagaacaagatttggcaga |
50385328 |
T |
|
| Q |
201 |
gtaaaaagcttgctttggttgacccttcaccagtgcaaatagtaacagaagcc--aacaacaacctcagttcaaca----acctctgctgtttcagtttc |
294 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||| ||| | || | | |||||||||||||||||| |
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|
| T |
50385329 |
gtaaaaaacttgctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttc |
50385428 |
T |
|
| Q |
295 |
agtcccnnnnnnngatccaaaatggtgggaagatgtgttcaatccaccggcaagaggtgaggattatacgatacttcaagcacttttcagcatagacatg |
394 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
50385429 |
agctccaaaaaaagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatggacatg |
50385528 |
T |
|
| Q |
395 |
ttgatactatttgtggcatgtatttgtggtattggtggatcattgacagcagttgataatcttggtcagataggaac |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||||||||||||||||||||||| |
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|
| T |
50385529 |
ttgatactatttgtggcatgtatttgtggtgttggaggaactttgacagcaattgataatcttggtcagataggaac |
50385605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 34297244 - 34297282
Alignment:
| Q |
192 |
tttggcagagtaaaaagcttgctttggttgacccttcac |
230 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
34297244 |
tttggcagagtaaaaaacttactttggttgacccttcac |
34297282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 12006667 - 12006743
Alignment:
| Q |
125 |
agtgctgctgtggtgattttcttgctttt---tctcccacttgctgttgtttttattgaagagaacaagatttggca |
198 |
Q |
| |
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||||||| |||||| ||||||| ||| || ||| ||||||||| ||| ||||||||||||||||| ||||||||| |
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|
| T |
12006667 |
agtgctgttgtggttattttctagctcttccttcttccacttgctattgattttattgaagagaacaggatttggca |
12006743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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