View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2640_high_16 (Length: 466)

Name: NF2640_high_16
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2640_high_16
NF2640_high_16
[»] chr8 (13 HSPs)
chr8 (1-449)||(18095565-18096008)
chr8 (203-438)||(18140096-18140331)
chr8 (184-289)||(18081508-18081613)
chr8 (366-449)||(18081360-18081443)
chr8 (349-449)||(12723997-12724097)
chr8 (349-449)||(12646232-12646332)
chr8 (349-449)||(12651364-12651464)
chr8 (349-440)||(13025664-13025755)
chr8 (350-444)||(12712662-12712756)
chr8 (359-438)||(12721511-12721590)
chr8 (349-449)||(12704868-12704968)
chr8 (359-409)||(27183143-27183193)
chr8 (359-409)||(27231092-27231142)
[»] chr4 (2 HSPs)
chr4 (349-409)||(4876024-4876084)
chr4 (349-449)||(1326392-1326492)
[»] chr3 (1 HSPs)
chr3 (349-449)||(5387576-5387676)
[»] chr1 (2 HSPs)
chr1 (349-417)||(17747323-17747391)
chr1 (363-410)||(40399723-40399770)


Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 18096008 - 18095565
Alignment:
Q  1 attggcatagtcattgttgttgcccacttgaaaaggaaagagattggcgttggcattgttaccaccacccacttgaacaggaaaaagattggcattttca 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18096008 attggcattgtcattgttgttgcccacttgaaaaggaaagagattggcgttggcattgttaccaccacccacttgaaaaggaaaaagattggcattttca 18095909  T
Q  101 tcacccacatcaccctctagaaaagcaatgtcattgacattgatttcgttaccaccacccatttgaaaaggaaaaggaaattgattggcattgtcacctt 200  Q
    |||||||| | |      | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095908 tcacccacttgaa-----aaaaaagcaaagtcattgacattgatttcgttaccaccacccatttgaaaaggaaaaggaaattgattggcattgtcacctt 18095814  T
Q  201 gctgttgaagaggaagtggccattccaaattagccctaatttcaaacctttcaccagaaaggatggaaagagattgctgaatgggaaaccctgactgttc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095813 gctgttgaagaggaagtggccaatccaaattagccctaatttcaaacctttcaccagaaaggatggaaagagattgctgaatgggaaaccctgactgttc 18095714  T
Q  301 aaatacgaggagacgtgtttcggcatcgtcatcgtgtttggatttgaggaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagac 400  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  18095713 caataagaggagacgtgtttcggcatcgtcatcgtgtttggatttgaggaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgac 18095614  T
Q  401 catgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095613 catgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatt 18095565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 203 - 438
Target Start/End: Original strand, 18140096 - 18140331
Alignment:
Q  203 tgttgaagaggaagtggccattccaaattagccctaatttcaaacctttcaccagaaaggatggaaagagattgctgaatgggaaaccctgactgttcaa 302  Q
    |||||||  |||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |    
T  18140096 tgttgaaatggaagtgggcaatctaaattagccctaatttcaaacctttcaccagaaagaatggaaagagattgctgaatgtgaaaccctgaccgttcca 18140195  T
Q  303 atacgaggagacgtgtttcggcatcgtcatcgtgtttggatttgaggaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagacca 402  Q
    ||| |||||||||  | || || ||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||    
T  18140196 atatgaggagacggatctcagcttcgtcatggtgtttggaaatgaggaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgacca 18140295  T
Q  403 tgatttgttagcacaggtgaaacgtttgagtgattt 438  Q
    |||||| ||||||||||| ||||||||||| |||||    
T  18140296 tgattttttagcacaggtaaaacgtttgagagattt 18140331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 18081613 - 18081508
Alignment:
Q  184 attggcattgtcaccttgctgttgaagaggaagtggccattccaaattagccctaatttcaaacctttcaccagaaaggatggaaagagattgctgaatg 283  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| ||||||||||||    
T  18081613 attggcattgttaccttgttgttgaagaggaagtggccattccaaattaaccctattctcaaacctatcaccagaaaggatggaaagggattgctgaatg 18081514  T
Q  284 ggaaac 289  Q
    | ||||    
T  18081513 gtaaac 18081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 366 - 449
Target Start/End: Complemental strand, 18081443 - 18081360
Alignment:
Q  366 tgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatt 449  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||  ||||||||    
T  18081443 tgttcatgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagatttgtaaggtaatt 18081360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 12724097 - 12723997
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| | ||||||||||||||| | |||||| ||||||||| |||| ||||| ||||| |||    
T  12724097 gaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaacgtgtgagagatttaagaggcaat 12723998  T
Q  449 t 449  Q
    |    
T  12723997 t 12723997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 12646332 - 12646232
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    |||||| || ||||||| ||||||||||| ||||||||| || | ||||||||||| ||| |||||||||||||| | | |||| ||||| ||||| |||    
T  12646332 gaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaat 12646233  T
Q  449 t 449  Q
    |    
T  12646232 t 12646232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 12651464 - 12651364
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    |||||| || ||||||| ||||||||||| ||||||||| || | |||||||||| |||| |||||||||||||  ||| |||| ||||| ||||| |||    
T  12651464 gaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccattatttcttagcacaggtgagtcgtgtgagagatttaagaggcaat 12651365  T
Q  449 t 449  Q
    |    
T  12651364 t 12651364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 440
Target Start/End: Original strand, 13025664 - 13025755
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttga 440  Q
    ||||||||| || ||||||||||||||| |  ||||||  | |||||||||||||||||| |||||||| |||||||||  ||| |||||||    
T  13025664 gaaattggtgcgaaacatgttcatgaaagtgtggttttcaagaagaagagaccatgattttttagcacaagtgaaacgtgcgagggatttga 13025755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 444
Target Start/End: Original strand, 12712662 - 12712756
Alignment:
Q  350 aaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagagg 444  Q
    ||||||||||| ||||||||||| |||| |||| |||| || | ||| ||  ||||||| ||| |||| ||||| ||||||||||||||||||||    
T  12712662 aaattggtacgaaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagtgatttgagagg 12712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 12721590 - 12721511
Alignment:
Q  359 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgattt 438  Q
    |||||||| ||||||||  ||||||||||||| | |||| |||||||||| ||| |||| ||||| |||||||| |||||    
T  12721590 cggaacatattcatgaatatagggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagattt 12721511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 12704968 - 12704868
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    ||||||||| |||||||||||||| |||| |||| |||| || | ||| ||  ||||||| ||| |||| ||||| |||||||| ||||| ||||| |||    
T  12704968 gaaattggttcggaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagggatttaagaggcaat 12704869  T
Q  449 t 449  Q
    |    
T  12704868 t 12704868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 27183193 - 27183143
Alignment:
Q  359 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttg 409  Q
    ||||||| ||| ||||||||||||||||| || | ||||||||||||||||    
T  27183193 cggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttg 27183143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Original strand, 27231092 - 27231142
Alignment:
Q  359 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttg 409  Q
    ||||||| ||| ||||||||||||||||| || | ||||||||||||||||    
T  27231092 cggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttg 27231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 4876084 - 4876024
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttg 409  Q
    ||||||||| ||||||||||||||||||||||||||||| || | ||||||| ||||||||    
T  4876084 gaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttg 4876024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 1326492 - 1326392
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    ||||||||| || |||||   |||||||| ||||||||| || | ||||||| ||| ||||   ||||| || || |||||||| |||||||||||||||    
T  1326492 gaaattggtgcgaaacataggcatgaaataagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaat 1326393  T
Q  449 t 449  Q
    |    
T  1326392 t 1326392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 449
Target Start/End: Complemental strand, 5387676 - 5387576
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 448  Q
    ||||||||| |||||||  | |||||||||||||||||| || | ||||||||| ||||||   |||||||| || || ||||| |||||||| ||||||    
T  5387676 gaaattggtgcggaacaattgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaat 5387577  T
Q  449 t 449  Q
    |    
T  5387576 t 5387576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 17747391 - 17747323
Alignment:
Q  349 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcaca 417  Q
    ||||||| | || ||||| |||||||||| | | ||||||||||||| |||||||||||| ||||||||    
T  17747391 gaaattgtttcgaaacatattcatgaaataaagcttttggaaaagaaaagaccatgattttttagcaca 17747323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 40399723 - 40399770
Alignment:
Q  363 acatgttcatgaaattagggttttggaaaagaagagaccatgatttgt 410  Q
    |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  40399723 acatgttcatgaaattagggttttcgaataaaagagtccatgatttgt 40399770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University