View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2640_high_17 (Length: 459)
Name: NF2640_high_17
Description: NF2640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2640_high_17 |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0162 (1 HSPs) |
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Alignment Details
Target: scaffold0911 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 52 - 442
Target Start/End: Complemental strand, 3352 - 2962
Alignment:
| Q |
52 |
gttgcaactagagtttgaagccacatccagacaagtggaagaggctggggatgtttccattccggtgtctcaagccgaattgcaaacagatttgcaaatg |
151 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3352 |
gttgcaaatagagtttgaagacacatccagacaagtggaagaggttcgggatgtttccattccagtgtctcaagccgaattgcaaacagatttgcaaatg |
3253 |
T |
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| Q |
152 |
cacaaagaatctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatttgctcatgtacttgaggaaa |
251 |
Q |
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| T |
3252 |
cacaaagaatctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatctgctcatgtacttgaggaaa |
3153 |
T |
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| Q |
252 |
tcaatgccacagacattgaatcacaacatgataatgcaaggggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattc |
351 |
Q |
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| T |
3152 |
tcaataccacagacattgaatcacaacatgataatgcaaggggtgggactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattc |
3053 |
T |
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| Q |
352 |
aacacaagcacaatccagaccgattgagatagcacatactacacgcgaggatgatactgacatgaatgttgcacctgcgcgtgctggttct |
442 |
Q |
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| T |
3052 |
aactcaagcacaatccagaccgattgagatagcacatactacacgccaggatgatactgacatgaatgttgcacctgcgcgtgctggttct |
2962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 60 - 434
Target Start/End: Complemental strand, 5606 - 5232
Alignment:
| Q |
60 |
tagagtttgaagccacatccagacaagtggaagaggctggggatgtttccattccggtgtctcaagccgaattgcaaacagatttgcaaatgcacaaaga |
159 |
Q |
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| T |
5606 |
tagagtttgaagccacatccagacaagtggaagaggttggggatgtttccattccggtgtctcaagtcgaattgcaaacagatttgcaaatgcacaaaga |
5507 |
T |
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| Q |
160 |
atctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatttgctcatgtacttgaggaaatcaatgcc |
259 |
Q |
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| T |
5506 |
acctacggccatgacctttacttatgaaaatgttaactcagccattcactatgataagctgccttaaacatctgctcatgtacttgaggaaatcaatacc |
5407 |
T |
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| Q |
260 |
acagacattgaatcacaacatgataatgcaaggggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcaacacaag |
359 |
Q |
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| T |
5406 |
acagacattgaatcacaacatgataatgcaaagggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcagcacaag |
5307 |
T |
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| Q |
360 |
cacaatccagaccgattgagatagcacatactacacgcgaggatgatactgacatgaatgttgcacctgcgcgtg |
434 |
Q |
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| T |
5306 |
cacaatccaaactgattgagatagcaaatactacacgcgaggatgatactgacgtgaatgttgcacctgcgcgtg |
5232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27539659 - 27539608
Alignment:
| Q |
1 |
agtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg |
52 |
Q |
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| T |
27539659 |
agtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcctatg |
27539608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16599513 - 16599462
Alignment:
| Q |
1 |
agtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg |
52 |
Q |
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| T |
16599513 |
agtaattcctgtcagatcagaggcaatgccctcagttttaccgactcctatg |
16599462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15200199 - 15200148
Alignment:
| Q |
1 |
agtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg |
52 |
Q |
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| T |
15200199 |
agtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatg |
15200148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15219284 - 15219233
Alignment:
| Q |
1 |
agtagttcctgtcagatcagaggccgtgcccgcagttttaccgactcctatg |
52 |
Q |
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||||||||||||||||||| |||| |||| ||||||||||| ||||||||| |
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| T |
15219284 |
agtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatg |
15219233 |
T |
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